Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1540 ATGGCTCCAGTTAATAATCCACAGCCTCTGCATGAAGACGACGTCGTATTGGATAAAGTGGAAGATGGAAATGGTATTAATTGTTGTTCACGTAGGAGTGAGCTCACTCTTTCTTTTGAGGGTGAAGTTTATGTTTTTCCTTCTGTCACTCCTCATCAAGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGGGATGTGCAGACAAGTGTGCCTGCAGTTGAAATACCATTTGATCAAAGTAACAGGGGCATGGGTGATGCTCCGAAGCATTCAAATCTTTCACGGAGAATAGCCTCCTTGGCCAGGTTTCGTGAAAAACGCAAGGAAAGGTGTTACGACAAGAAAATTAGGTACATCGTTAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTACATCCTTGAAGGAAGGCCCAGGTTCAGCTAATTGGGATTCTGCACAGAATGCTCATCAAGATGGCACTCCTCATTCTGATACTGTACGTAGATGTTATCATTGTAGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGCGGGCCAGGTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGTACATTTAGAGATCTCAGCAAGGGAGGGAGAAATATTTCTGTTGAGCAAAGTGATGTGGGAGTATCGGAATATTCTTCCAAGGCTATTGCTGCTGAAAGTTCTAATGATCATGCTGCTGTAAATCTTGGTGATGATGAGGAATTGCCTGAATCTGTGAAACACTTTACAAACACCCTGCCTCTGGGAATTGTTCATTCTTCAGTGAATGATGATGAGCAGGAACCTTTGGTTGACCTTTCTCATCTTTCGGATACAGATATTCACATTCCTGAAAAACTTTGA 888 0.4347 MAPVNNPQPLHEDDVVLDKVEDGNGINCCSRRSELTLSFEGEVYVFPSVTPHQVQAVLLLLGGRDVQTSVPAVEIPFDQSNRGMGDAPKHSNLSRRIASLARFREKRKERCYDKKIRYIVRKEVAQRMHRKNGQFTSLKEGPGSANWDSAQNAHQDGTPHSDTVRRCYHCSVSENNTPAMRRGPGGPRTLCNACGLMWANKGTFRDLSKGGRNISVEQSDVGVSEYSSKAIAAESSNDHAAVNLGDDEELPESVKHFTNTLPLGIVHSSVNDDEQEPLVDLSHLSDTDIHIPEKL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1540 295 Pfam tify domain 32 62 IPR010399 -
Lan3g1540 295 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 20 294 - -
Lan3g1540 295 ProSiteProfiles Tify domain profile. 28 63 IPR010399 -
Lan3g1540 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 213 - -
Lan3g1540 295 ProSitePatterns GATA-type zinc finger domain. 167 194 IPR000679 GO:0006355|GO:0043565
Lan3g1540 295 Gene3D - 159 220 IPR013088 GO:0006355|GO:0008270
Lan3g1540 295 ProSiteProfiles GATA-type zinc finger domain profile. 164 217 IPR000679 GO:0006355|GO:0043565
Lan3g1540 295 ProSiteProfiles CCT domain profile. 96 138 IPR010402 GO:0005515
Lan3g1540 295 SMART GATA_3 161 214 IPR000679 GO:0006355|GO:0043565
Lan3g1540 295 PANTHER GATA TRANSCRIPTION FACTOR 28 20 294 IPR045280 GO:0006355
Lan3g1540 295 Pfam GATA zinc finger 167 203 IPR000679 GO:0006355|GO:0043565
Lan3g1540 295 Pfam CCT motif 96 137 IPR010402 GO:0005515
Lan3g1540 295 MobiDBLite consensus disorder prediction 135 162 - -
Lan3g1540 295 MobiDBLite consensus disorder prediction 137 158 - -
Lan3g1540 295 CDD ZnF_GATA 166 210 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1540 Lan-Chr3 26863830 26869040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1540 34 209 Tify Gene Family AT1G51600 54.891 6.93e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan3g1540 CCT 1e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1540 - - gmx:100801328 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1149 9 18880346 18884961 Lan3g1540 3 26863830 26869040 PCT