Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1536 ATGGCAATAGTAGGGGTGCAACTTACTATTGAAGATCATCATGTGGTGATAGACAATGGCATATTAAGAGTCACATTATCAAACCCAGAGGGAATTGTGACTGGAATACAGTATAATGATATTGACAATTTGCTTGAAGTTTTGAATGATGAATCTAATAGAGGGTATTGGGACCTTGTGTGGAGCTCACCCACAAGTACAGGAACCACTGGTAGATTTGATGTGATAAAAGCAACCACTTTAAGAATTGTAGTGGAAAATGAGGACCAAGTTGAGTTATCCTTCTCAAGGACATGGGATACCTCTCTAGAGGGCAAATTAGTACCATTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCTTCTGGCTTCTACTCATATGCAATTTATGAGCACTTACAGGATTGGCCTGCTTTCAATCTTGATGAAACAAGAATTGCTTTCAAACTTAGAAAAGACAAGTTCCATTATATGGCAATGGCAGATAATAGACAAAGAGATATGCCTCTTCCAGATGACCGATTACCATCTAGAGGCCAAGCTCTTGCTTACCCAGAAGCAGTTCTACTTGTTAATCCGGTTGAACCAGAATTCAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGGTGGATATGTAAGGACCCAGCAGTGGGATTCTGGTTAGTTACACCAAGTAATGAATTTCGATCAGGTGGTCCTGTCAAACAAAACTTAACTTCTCATGTTGGACCCACTACTCTTGCTGTATTTGTGAGTGCTCATTATAGTGGAGAGGATTTGGTACCAAAATTGAATTCTGGTGAAGCATGGAAGAAGGTTTTTGGTCCAATTTTCATCTATTTGAATTCTGCATATGATGGAGATGACCCCCTTAATCTATGGCAAGATGCTAAACTTCAGATGTTGGTGGAAGTACAAAGTTGGCCCTATAGTTTTCCTGAATCTGAGGATTTCCCAAAGTGGGACCAACGTGGTAATGTTAGTGGCAGATTATTGGTCAGAGAGAGGTATATAAGTGATGATTACATATCAGCAAAAGGTGCTTATGTTGGTTTGGCTTCACCAGGGGACATTGGATCATGGCAAAGAGAATCCAAGAATTATCAATTTTGGGCTAAAGCAGATGATGATGGGTATTTCTGCATCAGCAATATACATATTGGGGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTGTGACCATAACAGAAGGTAGTGACATTGACATTGGTGATCTTGTTTATGAGCCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGCATACCTGATCGCTCGGCTGCTGAATTCTATGTTCCTGATCCAAATCCCAAATATATTAACAAACTCTATGCCAATCATCCTGACAAGTTTAGGCAATATGGACTATGGGAGAGATATGCAGAACTATACCCAGACAAAGACTTAGTTTTCACAGTTGGTGTTAGTGACTACACCAAGGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTCACCTTAACAATGTGAACAAAAACAGCACCTATAAACTTAGACTGGCTTTGGCATCAGCAACATTTTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGTAAATCATCCTCTATTTTCAAGTGGATTGATAGGAAGGGATAACTCTATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTATAATGTGGACATATCTGGTGCTAGATTTGTTGAAGGAGATAATACAATTTTTTTGACACAAGCAAGAGGCAATGGTCCATTTCTGGCTATTATGTATGATTATATTCGTTTAGAGGGTCCACCCATTATCAATAAGAAAATTTGA 1926 0.3863 MAIVGVQLTIEDHHVVIDNGILRVTLSNPEGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGRFDVIKATTLRIVVENEDQVELSFSRTWDTSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLQDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRDMPLPDDRLPSRGQALAYPEAVLLVNPVEPEFKGEVDDKYQYSCDNKDSQVHGWICKDPAVGFWLVTPSNEFRSGGPVKQNLTSHVGPTTLAVFVSAHYSGEDLVPKLNSGEAWKKVFGPIFIYLNSAYDGDDPLNLWQDAKLQMLVEVQSWPYSFPESEDFPKWDQRGNVSGRLLVRERYISDDYISAKGAYVGLASPGDIGSWQRESKNYQFWAKADDDGYFCISNIHIGDYNVYAWVPGFIGDYKYDVVVTITEGSDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYANHPDKFRQYGLWERYAELYPDKDLVFTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFHLNNVNKNSTYKLRLALASATFSELQVRVNDPKVNHPLFSSGLIGRDNSIARHGIHGLYWLYNVDISGARFVEGDNTIFLTQARGNGPFLAIMYDYIRLEGPPIINKKI* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1536 641 Gene3D - 441 632 - -
Lan3g1536 641 Pfam Rhamnogalacturonate lyase family 8 203 IPR010325 -
Lan3g1536 641 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Lan3g1536 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Lan3g1536 641 Gene3D - 333 430 - -
Lan3g1536 641 CDD RGL4_C 445 632 - -
Lan3g1536 641 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Lan3g1536 641 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Lan3g1536 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 636 - -
Lan3g1536 641 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan3g1536 641 SUPERFAMILY Starch-binding domain-like 377 429 IPR013784 GO:0030246
Lan3g1536 641 Gene3D - 6 295 IPR014718 GO:0030246
Lan3g1536 641 CDD RGL4_N 8 304 - -
Lan3g1536 641 CDD RGL4_M 334 433 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1536 Lan-Chr3 26826167 26835145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1536 1 634 Polysaccharide Lyase AT1G09890 71.384 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1536 K18195 - gmx:100793563 1199.11