Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1535 ATGTCTGCCCCAGGAGTACGGTTACATATTCAAGGTCACTATGTGGTGATGGATAATGGCATACTTCAAGTTACACTGTCAAATCCAGATGGAATCATTACCGGGATACGATATAATGGCGTTGACAATTTGCTTGAAGTTCTTAATAAGGAGACTAATAGAGGGTACTGGGATCTTATGTGGAGTGCACCAGGGAGCAAAGGACTCTTTGACGTGATTAAGGGAACATGTTTTCAAGTTATAGTTCAAAATGAGGAACAGGTGGAGATTTCATTCACAAGAATGTGGGATCCTTCTCTTGAGGGAATGCTTGTCCCCTTAAATATTGACAAAAGATTTGTAATGCTCCGGGGTTCATCAGGCTTCTACTCCTATGGAATTTATGAGCACTTAAGTGGATGGCCAGATTTTGAAATGAGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCGAGGGATTATGCCTTTTCCAGAGGACCGGTTACCAGGAAGAGGCCAAGCCTTGGCCTACCAAGAAGCTGTCCTACTAACCAATCCCAAGAATCCAAATCTGAAAGGCGAGGTGGATGACAAGTATCAGTATTCATGTATAAACAAAGATAACCAAGTACATGGGTGGATATCTGAAAATCCTCCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCACATGTAGGCCCCACCACACTTGCTATATTTCTTAGCGGTCACTATGCTGGACAAGATTTGGTGCCCAAATTTAGAGGTGGTGAGCCATGGAAGAAGGTTTTTGGACCTGTATACATTTATCTAAATTCTGGATCGACACGTGACAAATCTGACATTAACCTTTACCTGTGGGAGGATGCAAAAAGACAGATGAAGAATGAAGTTGAAAAGTGGCCATATTTTTTCCCAGCTTCAGAGGATTTTTTAAAGGCAGATCAACGAGGCAACGTCAGTGGCAGACTACATGTTTTAGACAGGTACATCAGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTGGCTCCACCAGGAGATGTAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCATAGCAGATGAGAATGGATTTTTTACGATTAGCAATATACGTCCAGGCGACTATAACTTATATGCCTGGTTTCCTGGTTTTGTCGGGGACTACAAACTTGATGATTTAATGAAGATAACCTCAGGTTCTTTTATTGAATTGGGTGGACTTGTGTATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCTGAGTTTTATGTTCCTGATCCCGATCCACAATATATTAATAGGCTTATCAAACATTCAGACAGGTTCCGGCAGTATGGATTGTGGAGTAGGTATGCAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTCAGTGATTACACAAAGGATTGGTTTTTTGCACAGGTTCCCAGAAGAAGAGAGGATAACACTTATCATGGAACAACTTGGCAAATCAAGTTTGAACTCAGTAGTGTGGATAAGGGAAGTACATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCGAATGCAAGGCGCCCGATATTTACGACTGGATTAATAGGAAGGGATAACTCAATTGCTAGACATGGAGTTCATGGAATATATTGGTTTTACAATGTGAATATACCAGGTTCTGTTCTTATTGATGGCACAAATACTTTATATTTCACACAACCAAGGAACCAGAGTCCCTTCCAAGGTATAATGTATGATTATATTCGTTTGGAAGGCCCACCTTGTCTCAAAGAAGAAGAACTTCAAGTTAAATAA 1935 0.4119 MSAPGVRLHIQGHYVVMDNGILQVTLSNPDGIITGIRYNGVDNLLEVLNKETNRGYWDLMWSAPGSKGLFDVIKGTCFQVIVQNEEQVEISFTRMWDPSLEGMLVPLNIDKRFVMLRGSSGFYSYGIYEHLSGWPDFEMSETRITFKLRKDKFQYMAMADNRRGIMPFPEDRLPGRGQALAYQEAVLLTNPKNPNLKGEVDDKYQYSCINKDNQVHGWISENPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAIFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSGSTRDKSDINLYLWEDAKRQMKNEVEKWPYFFPASEDFLKADQRGNVSGRLHVLDRYISTDLISANGAYVGLAPPGDVGSWQRECKDYQFWTIADENGFFTISNIRPGDYNLYAWFPGFVGDYKLDDLMKITSGSFIELGGLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPQYINRLIKHSDRFRQYGLWSRYAELYPDADLVYTIGVSDYTKDWFFAQVPRRREDNTYHGTTWQIKFELSSVDKGSTYKLRVAIASATLAELQIRVNDPNARRPIFTTGLIGRDNSIARHGVHGIYWFYNVNIPGSVLIDGTNTLYFTQPRNQSPFQGIMYDYIRLEGPPCLKEEELQVK* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1535 644 Gene3D - 441 631 - -
Lan3g1535 644 Gene3D - 331 426 - -
Lan3g1535 644 Pfam Rhamnogalacturonate lyase family 11 200 IPR010325 -
Lan3g1535 644 SUPERFAMILY Starch-binding domain-like 377 413 IPR013784 GO:0030246
Lan3g1535 644 CDD RGL4_N 6 298 - -
Lan3g1535 644 SUPERFAMILY Galactose mutarotase-like 18 300 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan3g1535 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 635 - -
Lan3g1535 644 SUPERFAMILY Galactose-binding domain-like 440 631 IPR008979 -
Lan3g1535 644 CDD RGL4_C 445 631 - -
Lan3g1535 644 Pfam Polysaccharide lyase family 4, domain III 443 630 IPR029411 -
Lan3g1535 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 635 - -
Lan3g1535 644 Gene3D - 7 309 IPR014718 GO:0030246
Lan3g1535 644 CDD RGL4_M 334 433 IPR029413 -
Lan3g1535 644 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1535 Lan-Chr3 26816079 26824831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1535 1 634 Polysaccharide Lyase AT1G09910 69.606 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1535 K18195 - gmx:100814185 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0908 15 18375950 18381422 Lan3g1535 3 26816079 26824831 LSH