Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1533 ATGGAGTTCTATGACAATGATTTCTTGGAAGAGTTAATGGCTCTAAGAAGAGAAACATTTAATACTAATCCAAGCATAGAAGAAAATGAGTTCTTCTCTAATGGCTATAGTTTTGATTGTTTTGAACAAAACTCTTCAACTTTTCTACTAAACAACACTCTGTGTGGTCAAGAATTTCCTCAAAGCTACAACAATGAGTACAACACCTTCAATGAAATCAATAATACCCTTGATACTCCACTTAACACCACTTCATTTCTTGGTCAAGAAGATTTCTCATTTTCCATGATTGAAGGAGAGGATAATACATGTTTTCTTGGTGAAGAGCTTCAGAATTTGGAGCTGCAAAACACATGCAAAATGGAGCCAACACTGTCACCAGAAATGGCAGTGTTCAACATAGGAACTGGTCTAGAAAGAAAGAATAGATCAAAGAAGCTTCAAGGGCAACCCTCCAAGAATTTAATGGCTGAAAGGAGAAGAAGAAAGAGATTAAATGATAGACTCTCAATGCTAAGGTCAATTGTCCCTAAGATAAGTAAGATGGATAGAACATCAATTCTTGGAGACACTATTGATTACATGAAAGAACTTCTGGATAAGATCAACAATTTGCAACAAGAAATAGAAGTAGATGCAAATATGACAGGCATTTTCAAAGATGTAAAACCAAATGAAATCTTGATTAGAAATTCTCCTAAGTTTGAGGTGGAGAGGAATTTGGACACTAGGGTTGAAATTTGCTGTGTAGGGAAGCCAGGCTTGTTGCTTTCTACAGTTAACACCCTTGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGTTGTTTCAATGATTTCTCAATGCAAGCTTCTTGCTCTGAGGAATTGGAGCAAAGGACAATGTTGAGTTCTGAAGATATAAAGCAAGCATTATTTAGAAGTGCAGGATATGGAGGAAAATGTTTGTGA 954 0.3595 MEFYDNDFLEELMALRRETFNTNPSIEENEFFSNGYSFDCFEQNSSTFLLNNTLCGQEFPQSYNNEYNTFNEINNTLDTPLNTTSFLGQEDFSFSMIEGEDNTCFLGEELQNLELQNTCKMEPTLSPEMAVFNIGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINNLQQEIEVDANMTGIFKDVKPNEILIRNSPKFEVERNLDTRVEICCVGKPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEELEQRTMLSSEDIKQALFRSAGYGGKCL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1533 317 Pfam Helix-loop-helix DNA-binding domain 155 198 IPR011598 GO:0046983
Lan3g1533 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 317 - -
Lan3g1533 317 Coils Coil 188 215 - -
Lan3g1533 317 Gene3D - 139 213 IPR036638 GO:0046983
Lan3g1533 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Lan3g1533 317 CDD ACT_UUR-ACR-like 243 284 - -
Lan3g1533 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 211 IPR036638 GO:0046983
Lan3g1533 317 PANTHER DNA BINDING PROTEIN 3 317 - -
Lan3g1533 317 SMART finulus 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1533 Lan-Chr3 26797408 26799090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1533 116 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.650 1.64e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g1533 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1533 - - gmx:100784380 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0912 15 18423396 18425149 Lan3g1533 3 26797408 26799090 LSH
Lan14g0712 14 14108335 14110277 Lan3g1533 3 26797408 26799090 LSH