Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1477 ATGCAACAGAGGGCAAAGTTGCTTCAACAACAACAACAACAAGCCCTGATGCAACAAGCTTTGCTTCAACAACAGCAGATGTATCACCCTGGCATGCTCGCTGCTGCTATGTCGCAGCAGATGGATCCTGTTCCAAGTGGGAATCTGCCTCCTGGTTTTGACACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTAATGTAAATGTCACGGATCAGCTCCTCGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGATGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGTGCATCTGCAGCCCTTGCTATAATGACATTGCACGGACGGCAACTATATGGTCAAGCACTTAAGGTGAACTGGGCATATGCCAATAGCAGTAGGGAAGATACTTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGTCCAGAGGTCACTGATGCAATTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATCAATGATATGACAGGTAAATGGCTGGGAAACAGGCAGATACGGTGCAATTGGGCAACTAAGGGTGCTGGTGCCAGCTCTGGCGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGAGAATAACAATGAGGACTCTCCTGAAAACAATCCTGCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACTCAAACTGAACTTCATTTCCAGTTCCATGCACTGGGTGCTGGGGTTATTGAAGAGGTCCGAATTCAGAGGGATAAAGGTTTTGGATTTGTCAGGTACAACACTCATGATGAAGCAGCATTAGCCATTCAGATTGGTAACGGACGAATAGTTCGTGGGAAGAATATGAAGTGTTCATGGGGTAGCAAGCCAACCCCTCCCGGAACAGCTTCAAATCCCCTACCTCCTCCTGCTCAACCATATCAAATGCTTCCCACTGCTGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGCTGGCTTACCAGCGCCAACTGGCCTTGAGTCAAGCTGCTGTATCCGGCCTTTCAGGTCAAGCCCTTCTACAAATGACTGGACAACATGGCCTAGCCCCTGCTTCGATGGGCATAAACTCGGGGGCATCTCAAGCCATGTATGACGGATATACTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1317 0.4632 MQQRAKLLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQQMDPVPSGNLPPGFDTSACRSVYVGNINVNVTDQLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDAILFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSGEEKNNDNQNAVVLTNGSSDGGQENNNEDSPENNPAYTTVYVGNLPHDVTQTELHFQFHALGAGVIEEVRIQRDKGFGFVRYNTHDEAALAIQIGNGRIVRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQMLPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1477 438 MobiDBLite consensus disorder prediction 223 265 - -
Lan3g1477 438 Gene3D - 245 344 IPR012677 -
Lan3g1477 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 435 - -
Lan3g1477 438 SUPERFAMILY RNA-binding domain, RBD 252 344 IPR035979 GO:0003676
Lan3g1477 438 CDD RRM2_PUB1 145 219 - -
Lan3g1477 438 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 11 435 - -
Lan3g1477 438 SUPERFAMILY RNA-binding domain, RBD 138 238 IPR035979 GO:0003676
Lan3g1477 438 CDD RRM3_TIA1_like 266 340 - -
Lan3g1477 438 SUPERFAMILY RNA-binding domain, RBD 42 137 IPR035979 GO:0003676
Lan3g1477 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 127 IPR000504 GO:0003723
Lan3g1477 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 216 IPR000504 GO:0003723
Lan3g1477 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 333 IPR000504 GO:0003723
Lan3g1477 438 Gene3D - 1 142 IPR012677 -
Lan3g1477 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 133 IPR000504 GO:0003723
Lan3g1477 438 SMART rrm1_1 267 336 IPR000504 GO:0003723
Lan3g1477 438 SMART rrm1_1 60 129 IPR000504 GO:0003723
Lan3g1477 438 SMART rrm1_1 145 218 IPR000504 GO:0003723
Lan3g1477 438 MobiDBLite consensus disorder prediction 227 265 - -
Lan3g1477 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Lan3g1477 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 340 IPR000504 GO:0003723
Lan3g1477 438 Gene3D - 143 244 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1477 Lan-Chr3 26312702 26319314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1477 51 340 Eukaryotic Initiation Factors Gene Family AT4G34110 25.581 3.58e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1477 K13201 - gmx:100777108 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1477 3 26312702 26319314 Lan3g1477 3 26312702 26319314 ECH
Lan15g0978 15 19029937 19036727 Lan3g1477 3 26312702 26319314 LSH
Lan14g0766 14 14570974 14577630 Lan3g1477 3 26312702 26319314 LSH