Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1468 ATGGATGAATATTCTGGTAGAAGAACTACTGGTGCGGTGGTAGCTCCTAGAAAGGGAATGGGCCATGTCTTTAGAGATACTGCTAATACGAGAGATCGAAATGGTCAAGCTTGCAACCGCCTCGGTTGCAGTAGCAGAGTCAGCTCTCCTAAAGGTGCTCAAATTGGCTCTTCTGAGAAAGGTAAATCTCTGAGACATTCAACCCGATCCTCTTCTAGTGTCAAGGAAGCAATGGGAAGTTCCTCTAGAACTTTCACAGGGACTAGTAACCCAGGAAAAACCTTTCGAAGGCCTCGGAAAACTTTGTTCTCTCAAGTAGAGGGAGATTCATCTGAAACAAGTAGCGTACAGGATGAACCAGAACCTTCAAACCTTGTCCCTCCACCTGAAAATATTAAGAGAGGGCTTCAAGCGAAAGTGGAAAATTCAGACTCTAGTGTAGCATCTAATACAAGATCTCGGAGGAATTTTCATACAAAGCCTGGATTGCGTGCTCAAGAAGTTAAAACTGTCGGTCAAATTGTGCGTGTTGGTAACAATAGGTCTGCGTTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCAGCAGGTGTCTGTTCATCATCTGATTCAACCCTTAACAGAAGCAAGGGTTTGATAAAAAAGAGAAATTGTGAAGGGGAAAGCAGTTCCAGTGCTAGAGGGAAGAACTTAACTGGGCCTTCATTTGAGGGACGGAATTCTGCTTCCCGAAATGGAATATCTATCTCTGATTCAAGAAGATCCATAAATACTCCTTCCCTCGGGGACAGGCCAGAGAGAAATGTAGCATCAGTTAGGACACGAAGAGCAGTGAGTGGCCAAGCCAGAGGAAGGTTATCCAACCAAGGAAATGCTAATCCTGTGGCACCCAATGACTCTCTTGCAACGATTACTCCTTTGCCATGTTCTGGTGGTCTTAATGTTCCTTGTGTATCACATCATTCTTCTGTGGAGGCTGCTTTAAGTCGTCCAGGCTCTTATATTATGCCAGTTACTAGCAGTGAGGAGTTATATGGTGTTATGCCCACGTCTCCTTCAGAATATGGCATAACTCGTTCTCTAATAAGTCGGGAGGGCTTTCGACGCCGCTACAATATGGATGGTATTGCAGAGGTAATGTTGGCACTTGAGAGGCTTGAACAAGATGTTGAGCTAACACACGAGCAAATTCTTATGCTGGAGTCCAACTTGTTCCTTGATGGACTGAGCTTCTATGATCAGCATAGAGACATGCGGCTGGACATCGATAACATGTCATATGAGGAACTGTTAGCTTTGGAAGAGAGGATTGGTACTGTGAGCACTGCTCTCACAGAGGAAGCACTATCAGAATGTCTGAAGAGAAGTTTCTATCAACCCTCACCCTCAGAGGATGAAGCCGAGAGTTGCAATGAGCATAAGGATGACACCAATTGCAGCATCTGCCAGGAGGAATATTTGGTTGAAGATGAAGTGGGGAGTCTGAAATGCGAGCATAAGTATCACGCGGTCTGCATACAACACTGGCTGAGGCTGAAGAACTGGTGCCCTATTTGTAAAGCACCAGTAGGGCCTTCAAATTCATCATCTTCATCTCATTAA 1608 0.4496 MDEYSGRRTTGAVVAPRKGMGHVFRDTANTRDRNGQACNRLGCSSRVSSPKGAQIGSSEKGKSLRHSTRSSSSVKEAMGSSSRTFTGTSNPGKTFRRPRKTLFSQVEGDSSETSSVQDEPEPSNLVPPPENIKRGLQAKVENSDSSVASNTRSRRNFHTKPGLRAQEVKTVGQIVRVGNNRSALRNLRCNSISDVIPAGVCSSSDSTLNRSKGLIKKRNCEGESSSSARGKNLTGPSFEGRNSASRNGISISDSRRSINTPSLGDRPERNVASVRTRRAVSGQARGRLSNQGNANPVAPNDSLATITPLPCSGGLNVPCVSHHSSVEAALSRPGSYIMPVTSSEELYGVMPTSPSEYGITRSLISREGFRRRYNMDGIAEVMLALERLEQDVELTHEQILMLESNLFLDGLSFYDQHRDMRLDIDNMSYEELLALEERIGTVSTALTEEALSECLKRSFYQPSPSEDEAESCNEHKDDTNCSICQEEYLVEDEVGSLKCEHKYHAVCIQHWLRLKNWCPICKAPVGPSNSSSSSH* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1468 535 Coils Coil 378 405 - -
Lan3g1468 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 525 IPR045191 GO:0061630
Lan3g1468 535 MobiDBLite consensus disorder prediction 67 95 - -
Lan3g1468 535 Pfam Ring finger domain 480 522 IPR001841 -
Lan3g1468 535 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Lan3g1468 535 MobiDBLite consensus disorder prediction 138 156 - -
Lan3g1468 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 525 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 30 56 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 104 121 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 1 164 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 283 299 - -
Lan3g1468 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 534 IPR013083 -
Lan3g1468 535 SMART ring_2 481 521 IPR001841 -
Lan3g1468 535 SUPERFAMILY RING/U-box 474 527 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 225 266 - -
Lan3g1468 535 MobiDBLite consensus disorder prediction 218 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1468 Lan-Chr3 26248685 26252064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1468 359 522 C3H Transcription Factor Family AT2G15530 41.463 7.51e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1468 - - gmx:100787213 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0983 15 19068522 19073529 Lan3g1468 3 26248685 26252064 LSH
Lan14g0772 14 14621010 14625564 Lan3g1468 3 26248685 26252064 LSH