Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1462 ATGGAAAAAGAGGTGAAGAACAAGTCCATTGATCATAACCACAAACTACAAAAAAATATTAGTAAACCAAGATCATCATTTTTGCCACCCCTTCAACCTCTCTCAATCAATAAGCCTAGTGTTGAAAAATGGCCTAGTGCAGGTTGTGATGATCTTGGAGTTTGGCCTATTCCACAAACTCCAAAAGGGTCCATAATAGCCTATGATTCAGGTCAAAACAACAAATATTTTCAGTTGAAAAAGGACAAATTGGCCTTCTTTGATAAAGAATGTTCAAGGATTTCTGAGTATATATACTTAGGGAGTGAGACAGTGGCTAAGAACCATGAACTTTTGATGCATAAAGGGATAACTCATGTGCTGAATTGTGTTGGTTTTGTTTGTCCTGAATATTTCGAAAGTGACTTTGTTTACAAGACACTTTGGTTGCAAGATAGCCCTACAGAAGACATTACAAGTGTTCTGTATGATGTTTTTGATTACTTTGAGGATGTTAGAGAACAAGGTGGGAGAGTCCTTGTTCATTGTTGTCAAGGGGTTTCAAGATCAAGTTCTCTTGTGATTGCTTATCTCATTTGGAGGAATGGACAAAGCTTCGAAGACGCTTTTCGGTTCGTGAAGAGTGCAAGAGGAGTAACAAATCCTAACATGGGTTTTGCTTATCAACTTCTGCAGTGCCAGAAAAGGGTTCATGATATGCCTTTAAGTCCAAATTCGAAGGTTAGGATGTACCGGATGGCGCCACATTCCCCCTATGATCCTCTTCATTTGGTTCCTAAAATGGTGAACCAAATAAGTGCACAAGCACTTGATTCTAGAGGGGCATTCATTGTTCATGTTCCTTCTGCTATTTATGTATGGATTGGAAAACATTGTAACTCGGCGATGTCACGCAATGCAAAGGCTGCAGCATTTCAGGTAATCCGTTACGAGAGGGCGAAGGGTCCAATTCTGAGCATCCTTGAAGGCAAAGAACCACCTGAGTTCTGGATTGCTCTTTCCGACACGGAAGAGGTCAAGAAGGAAGAACATTCTGAAAGGGAAAGCATAGAGATTGGTTCAAGAACAGTTGATGCATACGATTTGGATTTCGAGATTTTTCACAAGGCAATTGCTGGTGGAGTTGTTCCATCTTTTTCGGTACTTAATGCTGAATCAGAAACTTGCATTCCTGCTAGAGAACATGGTTGGGGAAGACTTAGGAGGAAATTTACTAGTGGTGGCATGAAAAGATTGTTCACATCATCCAAAAGGAACTATGATGCATCATTCAATGATCATTGTGGTATGATTATGGAAGAAGAAACTGTAGCTGAACCTTTGTTACTATCATCAAATTCTCCATGTAGTTCGGCATATTCCTTCGATTGTTCTGAAACTGTCAACTTAAGCTTCTCTATACCTTATGTTGCTTCATCATTGCCACCATCAACACCTTCTTCGACCTTAAGTTCGGATTACACCAGTTCATCCATATTTTCACCTTCCTCTACCAATTGGTCTGATTTATCGTTCATGTCTCATCGACAATCATCGCCTTTCGGCATGGAATCAATTGAACCCTTTTGTGTTAAAGATGCATCTTTCTTGGAGAGTTTCTCTTTACTTCGCAAAGAAGTTATCTCTTCACCAGCAAAGGCGTTTTTGGCTGATCACACCTTGGAAGCCGCAAACTACTATATGCCATCGAAAAAGCCTCTGATGTCCATTGCAGAGCGCAGAGGGAGTAATCCACCACCTCGCATGTTGCTATCATTGGTGAATGAATCCCCTGGTGACCACAAGAACATGGTAAGATCACAATATTTTCTTAGTTTGGCTTAG 1824 0.4046 MEKEVKNKSIDHNHKLQKNISKPRSSFLPPLQPLSINKPSVEKWPSAGCDDLGVWPIPQTPKGSIIAYDSGQNNKYFQLKKDKLAFFDKECSRISEYIYLGSETVAKNHELLMHKGITHVLNCVGFVCPEYFESDFVYKTLWLQDSPTEDITSVLYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLIWRNGQSFEDAFRFVKSARGVTNPNMGFAYQLLQCQKRVHDMPLSPNSKVRMYRMAPHSPYDPLHLVPKMVNQISAQALDSRGAFIVHVPSAIYVWIGKHCNSAMSRNAKAAAFQVIRYERAKGPILSILEGKEPPEFWIALSDTEEVKKEEHSERESIEIGSRTVDAYDLDFEIFHKAIAGGVVPSFSVLNAESETCIPAREHGWGRLRRKFTSGGMKRLFTSSKRNYDASFNDHCGMIMEEETVAEPLLLSSNSPCSSAYSFDCSETVNLSFSIPYVASSLPPSTPSSTLSSDYTSSSIFSPSSTNWSDLSFMSHRQSSPFGMESIEPFCVKDASFLESFSLLRKEVISSPAKAFLADHTLEAANYYMPSKKPLMSIAERRGSNPPPRMLLSLVNESPGDHKNMVRSQYFLSLA* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1462 607 Gene3D Protein tyrosine phosphatase superfamily 69 232 IPR029021 -
Lan3g1462 607 Gene3D Severin 239 341 IPR029006 -
Lan3g1462 607 SUPERFAMILY Actin depolymerizing proteins 238 343 - -
Lan3g1462 607 MobiDBLite consensus disorder prediction 1 30 - -
Lan3g1462 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 174 184 IPR016130 GO:0016311|GO:0016791
Lan3g1462 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 149 210 IPR000387 GO:0016311|GO:0016791
Lan3g1462 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 231 IPR029021 -
Lan3g1462 607 MobiDBLite consensus disorder prediction 1 18 - -
Lan3g1462 607 Pfam Gelsolin repeat 263 330 IPR007123 -
Lan3g1462 607 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 18 578 - -
Lan3g1462 607 SMART VILL_6 245 336 IPR007122 GO:0051015
Lan3g1462 607 CDD DSP 91 225 - -
Lan3g1462 607 PANTHER MKPA PROTEIN 18 578 - -
Lan3g1462 607 Pfam Dual specificity phosphatase, catalytic domain 98 228 IPR000340 GO:0008138|GO:0016311
Lan3g1462 607 ProSiteProfiles Dual specificity protein phosphatase domain profile. 90 232 IPR020422 GO:0006470|GO:0008138
Lan3g1462 607 SMART dsp_5 90 229 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1462 Lan-Chr3 26181355 26183922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1462 21 126 Protein tyrosine phosphatase (PTP) family AT3G55270 44.828 1.12e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1462 - - lja:Lj6g3v0574850.1 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0597 12 12815309 12818431 Lan3g1462 3 26181355 26183922 PCT