Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1448 ATGGAAATGATGGCATGCCAAATTTCAAGGTTACCTTATCAGGATTCTCTTAAACTACTTGAAGATGATATACAGCATGCTAATGTTTTGGCTGCTGCAATTCCAAGAGGAAAAGGTGGCACACTTCTTCAAATGAAATTGGTTTACAATCAATTGGCTCCTTTCTTTCTATTACTATTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTTCTACACAGATATCTCAACCTCTTCCACATATTGATATACAAGGTACACAATGATGGTAGATCAATAATAAGCACTCATGGAAGAAAGGCTACAATTGGTGACTTCTATGCCGTTATATTGCCATCTCTTCAGCGCCTTCATGGTAGCTTGGAGAAGTTCGACATTTCCGAAGAAGAACACTCTAGCATAGAAGAAGGTTCAAGTCATGGTAAGAAGAAGAAGATGATGATGATGATTGAAGGAGATGTGAAACTAAACAATGTTGATTTGCAAAGAGAAGATGAGTGTGGTATTTGCTTAGAGCCTTGCACCAAAATGGTTTTGCCGAATTGCTGTCATAACATGTGTATCAGATGCTACCGCAAGTGGAACACACGATCGCAGTCTTGTCCTTTTTGCCGCGGTAGCTTAAGGAGAGTTAACTCAGAGGATCTATGGGTGCTAACTTGTGATGAAGATGTTGTTGATGTTGAAACAGTTTCAAAGGAAGATTTGTGGCGTTTCTACCTCTATATCAACAAGCTACCTAAAGATCACCCAGATGCACTTTTTCTAATGTATTACGAGTACCTAATTTAA 792 0.3889 MEMMACQISRLPYQDSLKLLEDDIQHANVLAAAIPRGKGGTLLQMKLVYNQLAPFFLLLLQWMDCSCAGFLLHRYLNLFHILIYKVHNDGRSIISTHGRKATIGDFYAVILPSLQRLHGSLEKFDISEEEHSSIEEGSSHGKKKKMMMMIEGDVKLNNVDLQREDECGICLEPCTKMVLPNCCHNMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCDEDVVDVETVSKEDLWRFYLYINKLPKDHPDALFLMYYEYLI* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1448 263 SUPERFAMILY RING/U-box 156 209 - -
Lan3g1448 263 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Lan3g1448 263 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 263 - -
Lan3g1448 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 216 IPR013083 -
Lan3g1448 263 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
Lan3g1448 263 Pfam Ring finger domain 165 205 IPR001841 -
Lan3g1448 263 PANTHER RING FINGER PROTEIN 41, 151 6 263 - -
Lan3g1448 263 SMART ring_2 167 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1448 Lan-Chr3 26051347 26054070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1448 127 214 C3H Transcription Factor Family AT5G47610 28.261 8.21e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1448 - - gmx:100812518 416.387