LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan3g1447	ATGGATTTATTTCCTTTTTTTCTTGTTATACTCCCTTTGTTAACATCTTCAGCAATTTCTCAACTTCAAGAATTTATCAGCATTGATTGTGGAGGTTCAACAAGTAACTACACTGATAGAACAACAACTTTGTCATGGTTTTCAGACTCTATGATAATGAAACATGGCATGTCAGTAAAAGTAGAAAGTGCTAATGGAAACAAGGTTCAATATCAAAGGAGAAGAGATTTTCCTACAGATAGTAGAAAATATTGTTATACACTGAAAACTGCAGAGAGAAGAAGGTATTTGGTGAGAGCAACTTTTCAGTATGGAAGTTTGCAAAATGGTGACACATACCCTCAGTTTCAGATCTACTTGGATGCAACAAAATGGGCCACAGTGTCAATATATGATGCATCAAGAGTATATGTTGAGGAAATGATCTTTATGGCACCCTCAGATTCTGTTAATGTTTGCATGTGTTGTGCTACAACAGGTTCTCCTTTCATATCTACCTTGGAGTTAAGGCCTTTGAATCTTTCTATGTATGCCACAGATTTTGAGGACAATTTCTTCTTGAAAGTGGCTGCAAGGATTAACTTTGGTGCTCCTAGTGAGGATCCTGTCAGGTATCCAGATGATCCATATGATAGAATTTGGGATTCTGATCTTATTAGAAGACAAAATTATCTTGTTGGTGTTGCACCGGGCACAGAAAGAATCAACACAACTATGAACATAGAAATCGAGAGAAGAGAATATCCACCTATGAAAGTGATGCAAACTGCAGTTATTGGCACAAAAGGAGTACTCAGCTACAGATTAAACCTTGAAGACTTCCCTGCCAATGCTAGAGCTTATGCTTATTTAGCTGAGATTGAAGATTTGCCGAAGAACGAGACAAGAAAGTTCAAGTTGGAGCAACCTTATATAGCTGACTATAGCAATGCAATTGTTAACATAGCTGAGAATGCTAATGGAAGTTACACTCTTTATGAACCAAGTTACATGAATGTGAGTTTGAACTTTGTTCTTTCTTTCTCCTTTGTTAAGACCCCGGATTCTACTCGAGGACCTCTTCTAAATGCAATGGAAATAAGCAAATATTTGCCGATAGCATTGAAGACCGAAAGACAAGATTCAAATGCGGTGAATACATTTAGCTCCTTGTCTGCCGAAAGTGTCCTGATGAATGAAGGTGATCCTTGTGTACCAACACCTTGGGAGTGGATAAATTGTAGTACCACTACACCTCCAAGAATTACAAAGATAAACCTGTCAAAAAGGAATGTGAAGGGTGAAATTCCACATGAGCTCAACAACATGGAAGCATTGACAGAGTTGTGGTTAGATGGAAACTTTCTTACAGGTTCATTACCTGACATGAGCAATCTTATCAATCTAAAGATTTTGCATCTAGAGAACAACAAATTGAGTGGTTCACTTCCATCTTACTTGGGTACTTTGCCGAATTTACAAGCACTGTTCATACAGAATAACTCATTTAGTGGCGAAATACCATCAGGATTAGTATCTCAAAAAATCATTTTCAACTATGATAACAATCCTGGACTACATAGAGGGACAAAGAAGCATTCGAAGTTGATACTCGGAATTTCAATTGGAGTACTAGTAATTATACTAGTATTGTTCCTAGCAAGTTTAGTACTATTACATAAACTAAGGAGAAAAACTTCTCAACAGAAACATGATGGAAAAGGTATTTCCGGGCGAAGTAGCACGAAACCTTTAACAGGATATAGAGGAGGGAGTTTAAGGGATGAAGGTACTGCTTACTATATATCACTGTCCGAGTTGAAAGAAGCTACTAGTAACTTTGAAAAGAAAATCGGCAAAGGAAGCTTTGGATCTGTGTACTACGGAAAAATGAGTGATGGAAAAGAAGTTGCAGTTAAGACTATGACTGATCCATCAAGCCATGGGAACCAGCAATTTGTGAATGAGGTAGCTTTGCTTTCAAGAATTCATCACAGAAACTTGGTTCCTTTAATTGGATATTGTGAAGAAGAATATCAGCATATTCTGGTTTATGAGTATATGCATAATGGCACATTAAGGGATCATATTCATGTTCATGAATCTTCAAATCAGAAGAAATTAGACTGGTTAACTCGTCTTCGTATCGCCGAAGATGCAGCTAAAGGACTTGAATACTTACACACTGGATGCAATCCTAGTATCATACACAGAGATGTAAAGACAAGTAATATTCTCTTAGACATAAATATGAGAGCAAAAGTATCAGATTTTGGACTCTCAAGACTTGCTGAAGAAGATTTAACTCACATATCAAGTGTTGCAAGAGGAACTGTAGGCTACTTAGATCCCGAGTACTATGCAAATCAACAATTGACTGAAAAGAGTGATTTATATAGTTTTGGAGTTGTTCTTCTGGAACTGATATCTGGTAGAAAACCTGTCTCAGCAGATGATTATGGTCCTGAAATGAATATAGTTCATTGGGCAAGATCCTTAATAAGAAAAGGAGATGTTATAAGCATCATGGACCCTTCCCTAATAGGGAATGTGAAAACTGAGTCCATTTGGAGGGTAGCTGAAATTGCCATGCAATGTGTAGAACAACATGGTGCTTCTAGGCCAAGAATGCAAGAAGTGATTTTGGCTATACAAGATGCTTCTAAGATTGAAAAAGGATCAGAATCTCAGCTTAAATTATCAACTTCAGGTACCTCAAAACCACAATCTTCAAGGAAAACTTTGCTTACAAGTTTTCTTGAAATTGAGAGTCCTGATTTATCAAATGCTTGCATTCCATCAGCAAGATAA	2790	0.371	MDLFPFFLVILPLLTSSAISQLQEFISIDCGGSTSNYTDRTTTLSWFSDSMIMKHGMSVKVESANGNKVQYQRRRDFPTDSRKYCYTLKTAERRRYLVRATFQYGSLQNGDTYPQFQIYLDATKWATVSIYDASRVYVEEMIFMAPSDSVNVCMCCATTGSPFISTLELRPLNLSMYATDFEDNFFLKVAARINFGAPSEDPVRYPDDPYDRIWDSDLIRRQNYLVGVAPGTERINTTMNIEIERREYPPMKVMQTAVIGTKGVLSYRLNLEDFPANARAYAYLAEIEDLPKNETRKFKLEQPYIADYSNAIVNIAENANGSYTLYEPSYMNVSLNFVLSFSFVKTPDSTRGPLLNAMEISKYLPIALKTERQDSNAVNTFSSLSAESVLMNEGDPCVPTPWEWINCSTTTPPRITKINLSKRNVKGEIPHELNNMEALTELWLDGNFLTGSLPDMSNLINLKILHLENNKLSGSLPSYLGTLPNLQALFIQNNSFSGEIPSGLVSQKIIFNYDNNPGLHRGTKKHSKLILGISIGVLVIILVLFLASLVLLHKLRRKTSQQKHDGKGISGRSSTKPLTGYRGGSLRDEGTAYYISLSELKEATSNFEKKIGKGSFGSVYYGKMSDGKEVAVKTMTDPSSHGNQQFVNEVALLSRIHHRNLVPLIGYCEEEYQHILVYEYMHNGTLRDHIHVHESSNQKKLDWLTRLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRLAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDLYSFGVVLLELISGRKPVSADDYGPEMNIVHWARSLIRKGDVISIMDPSLIGNVKTESIWRVAEIAMQCVEQHGASRPRMQEVILAIQDASKIEKGSESQLKLSTSGTSKPQSSRKTLLTSFLEIESPDLSNACIPSAR*	930

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan3g1447	929	PANTHER	OS07G0107800 PROTEIN-RELATED	13	894	-	-
	Lan3g1447	929	SUPERFAMILY	Protein kinase-like (PK-like)	591	874	IPR011009	-
	Lan3g1447	929	Pfam	Protein tyrosine and serine/threonine kinase	607	874	IPR001245	GO:0004672\|GO:0006468
	Lan3g1447	929	Pfam	Malectin-like domain	28	362	IPR024788	-
	Lan3g1447	929	SMART	serkin_6	605	882	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan3g1447	929	Gene3D	Ribonuclease Inhibitor	366	518	IPR032675	-
	Lan3g1447	929	PANTHER	-	13	894	-	-
	Lan3g1447	929	SUPERFAMILY	L domain-like	399	506	-	-
	Lan3g1447	929	Gene3D	Transferase(Phosphotransferase) domain 1	681	900	-	-
	Lan3g1447	929	ProSiteProfiles	Protein kinase domain profile.	605	883	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan3g1447	929	MobiDBLite	consensus disorder prediction	566	580	-	-
	Lan3g1447	929	ProSitePatterns	Protein kinases ATP-binding region signature.	611	633	IPR017441	GO:0005524
	Lan3g1447	929	PIRSF	TyrPK_CSF1-R	512	562	-	-
	Lan3g1447	929	PIRSF	TyrPK_CSF1-R	599	699	-	-
	Lan3g1447	929	PIRSF	TyrPK_CSF1-R	35	167	-	-
	Lan3g1447	929	PIRSF	TyrPK_CSF1-R	689	924	-	-
	Lan3g1447	929	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	728	740	IPR008271	GO:0004672\|GO:0006468
	Lan3g1447	929	Gene3D	Phosphorylase Kinase; domain 1	586	680	-	-
	Lan3g1447	929	MobiDBLite	consensus disorder prediction	561	581	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan3g1447	Lan-Chr3	26040880	26048132	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan3g1447	13	929	Receptor kinase-like Gene Family	AT1G67720	69.664	0.0	1287

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Lan3g1447		Malectin_like	4.4e-87	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan3g1447	-		-	gmx:100807148	1566.98