Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1434 ATGATGGATGTTGCTGAGTTAGAAGAAAATCTATTTGCAGCAAGTGATGCTAAGTTACATGGAGAAATGTGCAAGCAACTATCTGCAATATATTGCAAAATATTGTCGATATTTCCGTCTTTAGAAGAAGCTAGGCCTAGGAGCAAATCTGGAATCCAGGCATTATGTTCATTGCATGTAGCTTTAGAAAAGGCGAAGAATGTTCTTCGACACTGTTCAGATTGCAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTTCTTCTAAAATTTGAGAAGACTAAGTGTGCTCTTGAAGATAGTCTTAAAATGGTGGAAGATATTGTTCCGCAATCTATTGGGTGTCAGATTGACGAAATTGTGAAGGAACTAGCAAGTATGGTATTTACACTCGACCTATCAGAGAAGCAAATCGGGGATGATTTAATTGCATTGCTTCAGAAGGGGAGACAGTTTAACGACTCTAGCGACAGTGGTGAGCTAGAATGTTTTCACCAGGCTGCTACTAGACTTGGAATTATATCTTCAAGAGCCGCCCTCACTGAAAGAAGAGATCTCAAAAAACTTATAGAAAGGGCTCGGTCCGAGGAAGACAAGCGGAAAGAATCAATTATTGCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCCGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCCGAAATCTCAAGAGGACGGTGTTTCTGGCAGTAATTGCCAGACCTTTAACAGACAGCTTTCGAAACTTAGTTCGTTTAATTTGAAAGCAAATAGTCGGAAATCCGGGCAGATGAACCTTCCTCCCGAAGAGTTAAGATGTCCAATATCTCTGCAACTTATGAGTGATCCCGTTATAATTGCTTCTGGCCAAACATACGAAAGGATTTGTATAGAAAAGTGGTTCAGGGATGGGCACAACACTTGTCCCAAGACTCAACAAAAACTCTCGCATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTCGTGGCTAGTTGGTGTCAACAGAATGGAGTTCCTATTCCTCAAGGCCCTCCTCAATCTCTCGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCCGTAAATAGTGTCAACTCCTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTCTAGAAGAGAGTACTATCTCTGAGAAAACTGAGACGAACGCAACTGAAAGCTTGTCTTCAGGAGAGGAAGATACTGAGCAGTATTTAAGTTATCTTAAAGCCTTGACCGAAGGGGACGATTGGAAGAAGAAGTGTGAAGTGGTGGAACGATTAAGGCGGTTGCTGCGGGATGACGAGGAAGCGAGGATTTTTATGGGGGCTAACGGATTTGTTGAAGCACTTTTGAAGTTTCTACAGTCAGCTGTACAGGAAGGGCATTTGATGGCTCGGGAAAGTGGAGCTATGGCTCTGTTTAACCTTGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAGTCTTATCGTTGTTGGAGGAAATGATCTTAAACACTAGTTCTCACGGTTGTGCAACAGCTCTCTATCTGAATCTTTCTTGCCTCGAAGATGCTAAGCCTGTGATCGGATCGAGTCAGGCTGTCCAGTTCTTAATTCAGGTTCTTCAAACCAACACTGATATCCAATGCAAGCTAGATTCTCTCCATGCTCTCTATAACCTCTCTACCGTGCCCTCCAATATCCCGTACCTCCTTTCGTCCGGCATCATTAATACCCTACAATCTGTTCTTGTAGGCCAGAGTGATTCATTGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCTATTTCTCAAGTTGGAAGGGAGGAAATAATGTTGGCTCCCGAACTCATAAGCGCATTGGCTTCGATTCTGGATACCGGCGAGCTCCAAGAGCAGGAGCAAGCTGTTTCTTGTCTCCTAATTTTGTGTAACAAGACCGACAAATGTATCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCGATATCAGTGAATGGCACCCCACGGGGAAGAGAAAAATCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGCCAACGTGCCCGCGACCACCGAGACCATGCACATGCAGAGACACTTCAACGCGCCGAAACACTCCAACACCCACCAGAGGCTAGTGATTTATCTATGGCTCCTCCCGAAGTGAAACCGCTATGCAAGTCGATATCTAGAAGAAAGGTGGGAAAAGCTTTTAGCTTTCTGTGGAAAAGCAAAAGCTATTCTGTTTACCAGTGTTAA 2331 0.429 MMDVAELEENLFAASDAKLHGEMCKQLSAIYCKILSIFPSLEEARPRSKSGIQALCSLHVALEKAKNVLRHCSDCSKLYLAITGDSVLLKFEKTKCALEDSLKMVEDIVPQSIGCQIDEIVKELASMVFTLDLSEKQIGDDLIALLQKGRQFNDSSDSGELECFHQAATRLGIISSRAALTERRDLKKLIERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVPKSQEDGVSGSNCQTFNRQLSKLSSFNLKANSRKSGQMNLPPEELRCPISLQLMSDPVIIASGQTYERICIEKWFRDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCQQNGVPIPQGPPQSLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPLEESTISEKTETNATESLSSGEEDTEQYLSYLKALTEGDDWKKKCEVVERLRRLLRDDEEARIFMGANGFVEALLKFLQSAVQEGHLMARESGAMALFNLAVNNNRNKEIMISAGVLSLLEEMILNTSSHGCATALYLNLSCLEDAKPVIGSSQAVQFLIQVLQTNTDIQCKLDSLHALYNLSTVPSNIPYLLSSGIINTLQSVLVGQSDSLWTEKCIAVLINLAISQVGREEIMLAPELISALASILDTGELQEQEQAVSCLLILCNKTDKCIEMVLQEGVIPALVSISVNGTPRGREKSQKLLMLFREQRQRARDHRDHAHAETLQRAETLQHPPEASDLSMAPPEVKPLCKSISRRKVGKAFSFLWKSKSYSVYQC* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1434 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Lan3g1434 776 MobiDBLite consensus disorder prediction 223 250 - -
Lan3g1434 776 SUPERFAMILY ARM repeat 426 706 IPR016024 -
Lan3g1434 776 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lan3g1434 776 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lan3g1434 776 MobiDBLite consensus disorder prediction 225 250 - -
Lan3g1434 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Lan3g1434 776 PANTHER U BOX DOMAIN-CONTAINING 2 722 - -
Lan3g1434 776 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lan3g1434 776 Gene3D - 399 718 IPR011989 -
Lan3g1434 776 Coils Coil 176 196 - -
Lan3g1434 776 SMART arm_5 540 581 IPR000225 GO:0005515
Lan3g1434 776 SMART arm_5 501 539 IPR000225 GO:0005515
Lan3g1434 776 SMART arm_5 455 499 IPR000225 GO:0005515
Lan3g1434 776 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 722 - -
Lan3g1434 776 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Lan3g1434 776 SUPERFAMILY RING/U-box 278 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1434 Lan-Chr3 25931192 25935617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1434 2 775 U-box Gene Family AT1G24330 66.156 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1434 - - gmx:100804344 1217.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0033 15 208205 212721 Lan3g1434 3 25931192 25935617 LSH