Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1427 ATGGAGTGGAATTCAAAATCACCGGGACAATGGGACTGGGAGGAGCACTTATTCTTCAACGGGAAAGCTTCAGAAAATCCTAAGTTACAATCAATCACAGATTGGAGTGCCGAAGCAGATCAAGAAATCAATGTTGGGCTGTTCTATCCATTAAGGAGTAGTCGTTGTTCCGAGTCTGAACTAATGCATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAATTCATCATCAAATGAGGATAGCAAATTATCTATGTTCACTTTGGAAGGTTCTCAAGATGATGATTCATCTCGTAAGAAAGAATTGTCCAAAGAAGAGCCAGTAGAAATTTATCCAGCACCCGAACCCTCTTCTGGCTCTGGTGAACCATTGCTCATTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTTTGCACAGGAAGTGATTCCATGAAACCTTCTTCAATTACTGGAAAGAAATGCAAATCCAATGGTCGGAACTTGCAACATCCAAGCTGCCAAGTTGAAGGCTGTGGCCTTGATCTCTCATCTGCGAAAGGTTACCATCGTAAACATAGAGTTTGTGAAAATCATTCCAAATCCCCTAAGGTGGTAATAGCTGGTTCAGAATGTCGATTTTGCCAGCAATGTAGCAGGTTTCATGGTCTGTCAGAATTTGATGATAAGAAAAGAAGCTGCAGACAACGTCTTTTAGATCATAATGCAAGGCGCCGCAAACCGCATCTTGATGAGGTCCGATTACATACATCGGCTTTGTCTTCATCACCCTATGATAGGCAACTAGTGAGGCCATTTGCATATTCAAGGACTGCTACAAAAGATTTCCTCATGAAGCCGGAAAAAGCCTTCAACAAGATACCAAGTGTTGTCACTATGCTTTCTAATGATTCAAGTGCCCTTCTTACATCCAAAGGCATAGCAACCAAGACTATTATTACAGGTACAGAAGATCCTATAACCTCTTCTAATCTGAATGCTACACAAGATGTTAACCATGCTCTCTCTCTTCTGTCAAACAACTCATCATATGAGACCAAGTCCTTCTCCATAACAACACATGCAATGTCTCATCATCACTTACCCTTTGCTTCATCGGAATATTGGAACACTCATCAGCAACCACCAAATTCCAGAATGTGTGTCACCGCCGACTCGGATTGCGATAATAGCAATCGCTTTCAAGACTTCCAGTCGTGGAACACACTATGA 1218 0.4171 MEWNSKSPGQWDWEEHLFFNGKASENPKLQSITDWSAEADQEINVGLFYPLRSSRCSESELMHASSSRSSKSASINSSSNEDSKLSMFTLEGSQDDDSSRKKELSKEEPVEIYPAPEPSSGSGEPLLILKLGKRLYFEDVCTGSDSMKPSSITGKKCKSNGRNLQHPSCQVEGCGLDLSSAKGYHRKHRVCENHSKSPKVVIAGSECRFCQQCSRFHGLSEFDDKKRSCRQRLLDHNARRRKPHLDEVRLHTSALSSSPYDRQLVRPFAYSRTATKDFLMKPEKAFNKIPSVVTMLSNDSSALLTSKGIATKTIITGTEDPITSSNLNATQDVNHALSLLSNNSSYETKSFSITTHAMSHHHLPFASSEYWNTHQQPPNSRMCVTADSDCDNSNRFQDFQSWNTL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1427 405 MobiDBLite consensus disorder prediction 60 124 - -
Lan3g1427 405 SUPERFAMILY SBT domain 167 247 IPR036893 GO:0003677|GO:0005634
Lan3g1427 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 22 402 - -
Lan3g1427 405 MobiDBLite consensus disorder prediction 60 93 - -
Lan3g1427 405 Pfam SBP domain 169 242 IPR004333 GO:0003677
Lan3g1427 405 MobiDBLite consensus disorder prediction 94 110 - -
Lan3g1427 405 Gene3D - 160 230 IPR036893 GO:0003677|GO:0005634
Lan3g1427 405 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Lan3g1427 405 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 402 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1427 Lan-Chr3 25881741 25884696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1427 1 361 SBP-box Gene Family AT5G43270 37.629 9.87e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan3g1427 SBP 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1427 - - lang:109344122 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0025 15 168647 174511 Lan3g1427 3 25881741 25884696 LSH
Lan14g0228 14 2570069 2576141 Lan3g1427 3 25881741 25884696 LSH