Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1402 CCACCACCACCACCACCACCACCATCACATAGAGATAGAAGGGATAGAGGGTACAGCAGAGACAGAGATCTTCCAACAAGTCTTCTCGTTCGTAACCTCAGTCATGATTGCAGGCCAGAGGATATTCGAAGACCCTTTTCTCAATTCGGTGCTCTTAAAGACATTTACCTCCCTAAGGATTACTACACTGGAGAACCCCGTGGTTTTGGTTTTGTCCAGTTTGTGGATCCTGCTGATGCCGCCGATGCTAAACATCACATGGATGGTCAATTTCTTCTTGGTCGTGAGTTGACTGTTGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGACCAGAGAAAGAGGGGGTCGATCTAATGATCGAAGAAGGTCTCCTCCTCGCTACTCTCGATCACCCCGCTACTCTCGATCCCCACCACCACGTCACAGATCTCGCAGCCATCACTATTATTCTCCTCCTCCTAAGCGACGGGAATATTCAAGGTCTGTGTCACCTGAGGAAAGAAGATACAGCCGAGAAAGATCATATTCACCGCAGAAAAGAGAGAGGTCATACTCACGGTCTCCACCACCCTTCAATGGCAGTGGCTCAAGGAATCGAAGCCAGAGTCCAGCAAAGGACCCCCCAAGCCGGAGCAGAAGTCCCACCCCAGACCGGGAATCAAGCCGTGGTGCTAGGTCTCCCAGTCCGTGA 702 0.5071 PPPPPPPPSHRDRRDRGYSRDRDLPTSLLVRNLSHDCRPEDIRRPFSQFGALKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKHHMDGQFLLGRELTVVFAEENRKKPTEMRTRERGGRSNDRRRSPPRYSRSPRYSRSPPPRHRSRSHHYYSPPPKRREYSRSVSPEERRYSRERSYSPQKRERSYSRSPPPFNGSGSRNRSQSPAKDPPSRSRSPTPDRESSRGARSPSP* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1402 233 MobiDBLite consensus disorder prediction 104 233 - -
Lan3g1402 233 MobiDBLite consensus disorder prediction 104 130 - -
Lan3g1402 233 MobiDBLite consensus disorder prediction 154 184 - -
Lan3g1402 233 MobiDBLite consensus disorder prediction 8 22 - -
Lan3g1402 233 SUPERFAMILY RNA-binding domain, RBD 25 132 IPR035979 GO:0003676
Lan3g1402 233 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 13 217 - -
Lan3g1402 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Lan3g1402 233 MobiDBLite consensus disorder prediction 139 153 - -
Lan3g1402 233 MobiDBLite consensus disorder prediction 185 212 - -
Lan3g1402 233 MobiDBLite consensus disorder prediction 1 26 - -
Lan3g1402 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Lan3g1402 233 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 13 217 - -
Lan3g1402 233 SMART rrm1_1 27 100 IPR000504 GO:0003723
Lan3g1402 233 Gene3D - 8 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1402 Lan-Chr3 25688192 25690532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1402 7 89 Eukaryotic Initiation Factors Gene Family AT3G11400 41.379 4.81e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1402 K12900 - gmx:100775883 257.299