Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1388 ATGGGTTGTTCAAATTTGTTCAGCAACGCCGCTGTTTATGTTTCACTCACAACCAAATACAACAACCACTCTTTCTCTTTCTCTTTAACCCCATCTTCTACAACCTCTCCAACTCAAGTCACGCGTGTTATAACAAACAATGATTCTTCACTCAAACCAAGTTTTGGAAGGCTTAAACCCCAGAAACTCAAACCTCTTATCCACAAAACCAAACACCAAAAAAGCAGCAGTAACAGTAACAGGAACAGGAACAGGGATAAGGATGATGATGATAATGGTGATGAAGAAGAAGATAATTCAAATGCAGCATCTCATTTCAAAGCATCAAAAGGAAGAGGATGGGGAGATGGTGGAGGATCTTACCGTGCCGAATCCTCACAAACATATCTAAGAAAAACAACTCCTGATACAAACTTTTTCAGTCTCAAGTCATTCACAGATTTAGGGTACAGTCACTATATGATTCAATCCTTGAAAAAACTCTCTTTTACCAGCCCTTCCCATATACAGGCCATGGCATTTGCACCTGTTATTGGTGGAAAGACTTGTGTTGTAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCGTATCTTGTACCAATAATTCAGCGTCTTAGACAAGAAGAACTTGATGGACATAGTAAATCCTCTTCACAAGCTCCTAGAGTTGTTGTACTTGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTATCACTGGTGGCTTTCGACAAAGAACTCAGCTGGAAAATTTAAAGCAGGGTGTTGATGTCTTAATTGCTACACCTGGCCGTTTTTTGTCCCTGATAAAGGAAGGCCTGTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTATTTGGTGATGAAGACTTTGAAGTAGCTCTCCAACACTTGATTAATTCTTCACCAGTTGCTACTCAATATCTGTTTGTGACTGCAACTTTACCAAAAGATATTTACAGCAAACTGGCTGAAGTTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGTATAAGCTCTCGCCTTGAAGAGGTCCTAGTAGATTGTAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAAACTCCTGTCCCCAGAACTATTGTGTTCTGTAACAAAATAGAAACATGCAGAAAAGTTGAAAATGCATTGACTCGTTTTGATAGAAAAGGAAGTAATATACAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCATGCTAGTATGAAAGAGTTTACACGTTCTCCATCAAAACAAGTCTCCCAGTTTATGGTTTGCACTGACAGAGCATCACGAGGAATAGACTTTGCTGGAGTGGATCATGTCATACTATTTGATTTCCCACGTGATCCAAGTGAATATGTGCGGCGTGTTGGAAGAACAGCGAGAGGTGCTAGAGGAGAGGGCAAGGCATTTATCTTTGTGGTTGGGAAGCAAATCTCGCTTGCACGCAAAATAATGGAAAGAAATCGCAAGGGTCACCCACTGCATGATGTACCCTCAGCTTATGAGCTATGA 1647 0.408 MGCSNLFSNAAVYVSLTTKYNNHSFSFSLTPSSTTSPTQVTRVITNNDSSLKPSFGRLKPQKLKPLIHKTKHQKSSSNSNRNRNRDKDDDDNGDEEEDNSNAASHFKASKGRGWGDGGGSYRAESSQTYLRKTTPDTNFFSLKSFTDLGYSHYMIQSLKKLSFTSPSHIQAMAFAPVIGGKTCVVADQSGSGKTLAYLVPIIQRLRQEELDGHSKSSSQAPRVVVLAPTAELASQVLDNCRSMSKSGVPFKSMVITGGFRQRTQLENLKQGVDVLIATPGRFLSLIKEGLLQLTNLRCAVLDEVDILFGDEDFEVALQHLINSSPVATQYLFVTATLPKDIYSKLAEVFPDCEMIMGPSMHRISSRLEEVLVDCSGEDGQEKTPDTAFLNKKSALLQLAEETPVPRTIVFCNKIETCRKVENALTRFDRKGSNIQVLPFHAAMTQESRHASMKEFTRSPSKQVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGARGEGKAFIFVVGKQISLARKIMERNRKGHPLHDVPSAYEL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1388 548 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 45 547 - -
Lan3g1388 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 548 IPR001650 -
Lan3g1388 548 SMART ultradead3 162 370 IPR014001 -
Lan3g1388 548 Pfam DEAD/DEAH box helicase 168 341 IPR011545 GO:0003676|GO:0005524
Lan3g1388 548 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 45 547 - -
Lan3g1388 548 MobiDBLite consensus disorder prediction 62 78 - -
Lan3g1388 548 Gene3D - 364 541 IPR027417 -
Lan3g1388 548 MobiDBLite consensus disorder prediction 45 127 - -
Lan3g1388 548 SMART helicmild6 418 508 IPR001650 -
Lan3g1388 548 CDD SF2_C_DEAD 367 518 - -
Lan3g1388 548 CDD DEADc 154 349 - -
Lan3g1388 548 Pfam Helicase conserved C-terminal domain 391 507 IPR001650 -
Lan3g1388 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 519 IPR027417 -
Lan3g1388 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Lan3g1388 548 Gene3D - 119 355 IPR027417 -
Lan3g1388 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 355 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1388 Lan-Chr3 25554938 25559689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1388 142 529 Eukaryotic Initiation Factors Gene Family AT3G19760 26.289 2.69e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1388 K13179 - gmx:100784377 699.123