Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1367 ATGAATAATAATAATCACCACCACAACCACCACCCTCATCCTTTCAATCACGGAAGTGGTTGCAATAATAATAATAACGTATTTCCAATCCCAAATCCATACTATGATCATCATCAACAACAGCAACAACAACAACATGTTAATCATTTCAACAACAACCATTCGATGCCACCCCGTCCTTTCCGCAAACGAGCTTGGCATCAAGGAGATCAAGTGGATGGTTGCAGTCATGTAAAAGTTTATGTTGCACCAGTTCCAAGAACATCAACAGAGGCTGATGTTCGCCTTGTGTTTGAAGTATATGGAACTATTATTGAGGTTGTTCTTTTAAAGGATAAGTTAACTGGTGCACGACAAGGAAGTTGTTTAGTGAAATATGCAACACTAGATGAAGCTGACAGGGCTATTAACGCTTTAAACAATCAGTATACTTTTCCTGGGGAAGCCTCTCCAGTTGTTGTCAGATATGCTGATCGAGAACGTGAACGTCTTGGAGTTCAAAGAAACTTAGAAATGAAAGGTCGTTTAAAAGAGGTGGTGTTGTATAAAGTGTATGTTGGTCATATCAACAAAGAAGCTTCAAAAAGGGATTTTGAAGATATATTTTCCCCCTACGGTCATGTAGAAGAAGTCTTCATTCCAAACCTTCGTGGATATGCGTTTGTCAAATATTCTAATAGAGAGATGGCATCAGCTGCAATCGAAGGGTTGAATGGAAAATTCACGATGAGAGGCTGTGACAATCCATTAATTGTTCGTTTTGCTGATCCTATGAAACCTAAGTCTGGCGAATCAAGGGGCAAATATTTACCTGGAAATTTCGGACCCGGTTCTCAAGAACCAGCAGCTTGGCCACAACCAAATTTTGGTAATTCCAATATAGGAAGGAGTATTCCGCCTACTGGCCCACATCATCCCACAATTCCACACCCACAAGTTACTTCTCAAATGCAAAACTGGGAATGTGGCACTTCTGTGGTACAACAGCCATTTCCTTTCCAACAAGTACATTCACAAATGGTCTCAATGCCCTTGCAGCCAATTCAAGCTCCAAATGTGTCTTCTCAACCATTTAGTACGGAGGTGCAGAGACAGTCGCATCCAGCAGATTCATCAGCTCAAAATATGGAGCAGAAACTAAATTCACAGTTACCTACTCAAACTGGAAGCAATCCTGATAAAGTTGTAGACAGCATCCCACCCGTTGTGCCTATAAATTTCCCAGATGAAGTTTTTCCAGACTGTGACTGGAGTGAACACTACTGTCCTGATGGTCAAAAGTACTACTATAACTGTGTCACCTGCGAAAGCCGATGGGAGAAGCCGGAGGAATATGTGCTTTACGAGAAAGAATCACAGAAGCCGCAAGGGCAGGAGGACCATAGCAGTCTTCACTCACAATTGTCATCATCTTCCCCTCAACAAGTTGCTCAAAGACATCAGGATATAAATAATGATCTGAAGCAGTCAGAAACAAGTAATGTTGAGCAGGTGAAATAG 1500 0.4147 MNNNNHHHNHHPHPFNHGSGCNNNNNVFPIPNPYYDHHQQQQQQQHVNHFNNNHSMPPRPFRKRAWHQGDQVDGCSHVKVYVAPVPRTSTEADVRLVFEVYGTIIEVVLLKDKLTGARQGSCLVKYATLDEADRAINALNNQYTFPGEASPVVVRYADRERERLGVQRNLEMKGRLKEVVLYKVYVGHINKEASKRDFEDIFSPYGHVEEVFIPNLRGYAFVKYSNREMASAAIEGLNGKFTMRGCDNPLIVRFADPMKPKSGESRGKYLPGNFGPGSQEPAAWPQPNFGNSNIGRSIPPTGPHHPTIPHPQVTSQMQNWECGTSVVQQPFPFQQVHSQMVSMPLQPIQAPNVSSQPFSTEVQRQSHPADSSAQNMEQKLNSQLPTQTGSNPDKVVDSIPPVVPINFPDEVFPDCDWSEHYCPDGQKYYYNCVTCESRWEKPEEYVLYEKESQKPQGQEDHSSLHSQLSSSSPQQVAQRHQDINNDLKQSETSNVEQVK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1367 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 159 IPR000504 GO:0003723
Lan3g1367 499 SMART ww_5 412 444 IPR001202 GO:0005515
Lan3g1367 499 Pfam WW domain 416 442 IPR001202 GO:0005515
Lan3g1367 499 ProSiteProfiles WW/rsp5/WWP domain profile. 417 444 IPR001202 GO:0005515
Lan3g1367 499 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Lan3g1367 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 147 IPR000504 GO:0003723
Lan3g1367 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 242 IPR000504 GO:0003723
Lan3g1367 499 ProSitePatterns WW/rsp5/WWP domain signature. 417 442 IPR001202 GO:0005515
Lan3g1367 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 257 IPR000504 GO:0003723
Lan3g1367 499 MobiDBLite consensus disorder prediction 1 23 - -
Lan3g1367 499 MobiDBLite consensus disorder prediction 349 394 - -
Lan3g1367 499 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 61 468 - -
Lan3g1367 499 SUPERFAMILY WW domain 416 448 IPR036020 GO:0005515
Lan3g1367 499 SMART rrm1_1 79 155 IPR000504 GO:0003723
Lan3g1367 499 SMART rrm1_1 183 253 IPR000504 GO:0003723
Lan3g1367 499 Gene3D - 70 165 IPR012677 -
Lan3g1367 499 PANTHER RNA BINDING PROTEIN 61 468 - -
Lan3g1367 499 MobiDBLite consensus disorder prediction 450 499 - -
Lan3g1367 499 SUPERFAMILY RNA-binding domain, RBD 40 168 IPR035979 GO:0003676
Lan3g1367 499 MobiDBLite consensus disorder prediction 459 499 - -
Lan3g1367 499 Gene3D - 176 264 IPR012677 -
Lan3g1367 499 Gene3D - 414 457 - -
Lan3g1367 499 MobiDBLite consensus disorder prediction 349 400 - -
Lan3g1367 499 CDD WW 415 444 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1367 Lan-Chr3 25453000 25462204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1367 76 308 Eukaryotic Initiation Factors Gene Family AT1G71770 27.935 2.54e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1367 K13207 - gmx:100795107 575.474