Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1355 ATGGATAATAAGGAAGATGATGAAGCTCCAACTCTACTCTCTCATGACCTTTCAAACACACAAGATGAAGGAGAAAACGTGATCGCAGATGAGTTACCTCAAGAAGGAGAAAAAGCTGTGGATGATATAGGTCTTGGAATTGATTACGTGGCATCAGGGAAGACGGAAGCTGCGGTGGTTGTGTCGGAGGAGAGAGAGGTTTCCGATTCGGTTACTGAGGTCGAACCTATTGAGGGTGATGAGATATTTGAGGAGGATAAAGTAACTTCAGCTATTGATGAAGCTGAGAATGTGATTCAGAATCAGAGAGTGGAGGAGGGAACTGAGGTTGGTGACGTGGAGAGTGGAAAGGCGGAAGAAGAAGAAGATGATGCTGATGTGGGATATGATGATAGCGCCGATGAAGCAGACGTTGAAATCGGTCATAGTCAGGGAACTGATGATGTAATCAGAGATGAAAAGGAGGTTCCGAATGAAGAACAAGAAGAAGAGAAGGAGCTAAGTGTTCATGAAGGTGATAACGATGGTGTTGGTGATGATACGACACAAGATACAGACACTGCTGCTTTGATGGAAGAAGGAGAAGGCGAAGAAGAAGCTGGCGATGGTGATGGTGATGGTGTGGCTCAAGATATAGAAGAAGAAGAAGAACAAGGAGGTGGTGGTGATGGTATGGAAGAAGATGATGAGGTGAGGGAGGAGCAGAGTGAAAGTGTGAGTGGTGGGAAGAGAAAGCGTGGGCCTGCAAAGAATTCTAAGACAACAAGGAGAGTTGCTTCCAAGAAAAAGACTGAAGAGGACGTTTGTTTCATTTGCTTCGATGGGGGCGACCTTGTGCTTTGCAACCGCAGGGGATGTCCAAAGGCTTACCATCCTTCATGCGTTAATCGTGATGAAGCCTTTTTTCGAACCAAGGGAAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCTCACTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGGTGCATCAAAGACGCTATTATCTTTTGTGTTAGGGGAAACAAGGGCTTTTGCGAAACATGCATGACAACTGTGATGTTGATTGAACAGAATGAGCAGGGAAACACGGGACAAGTGGATTTTGATGATAAAAATAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTATCTCTAACATTTGATGAACTTACTGAAGCTAAAAACCCTTGGAAGGGATCTGATATGGCTGCATCTAAAGATGAATCACCAGATGAACTTTACGATGCCAACAATGATAAAGGATCTGATTCAGATAACTCCTACGAGAATGTAGGTTCGAGTCGTTCTAAAAGAAGAAAGGGCAAGAAACGGGCAAAATCTCGTTCCAAGGAAGGGAATTCATATGCAGCAACAGTGCTTGCTGCTGATGTGACATCTGCAGATGACCGATCTGAATGGTCTTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACACATCTATTTTGTCTCAGTTTGATGTTCAAGCTCTTTTGCTAGAGTACATCAAAAGAAATAAGCTTCGGGACCCTTGCCGAAAAAGTCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTTTAAAAGAGGACTACCAGGGTGAAGATCTGCAGGGGAGTGTCGTTGATACTGACGTTACTCATTTAGACGGTGATGGAAACTCCGATTCATATCTCAAAGCTGGCAAAGATAAGAGACGTAAAACTCGTAAAAAGGGTGATGAGAGAGGACTCCATTCTAATGTTGATGATTATGCAGCTATTGATAATCACAATATCAATTTAATTTATCTAAGACGTAATTTGGTTGAAGATCTACTTGAAGATACAGAGAATTTTCCTGATAAAGCTGTTGGTTCCTTTGTCAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTCGTTCAGGTTGCAGGTACGTGCAAAGCAGCAGAGCCATATAAAGTGGGTAAAAGGATGACGGATATCTTGCTAGAGATTTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAACGTCTTCGCCAAAGCATAAAGTGTGGACTTATAAATCGACTGACTGTGGGCAATATTCAGGACAAGGCATTTGCACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGGCGAAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGAAGATTGGAGGAAGTTCCAGAAATACATGTGGATCCCAAAATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGAATGATAAAGGACAAGAAAGCTATATGAGACCTAGAGGATCTGCTGCATTTGGAAGGAAGGCCAGAGAAATTGTTTCTCCTAGAAGTGGTTCAAGTGATTCTTGGAGTGGAACAAGGAATTATTCTAATGCTAATAGGGAACTCAATAGAAATTTGTCTAATAAGGGGTTTTCAATGAAAGGTGATGATGTTTTTAATTCTAGTGAGGCATTAAATGATGCTCAATTGCGAGATAGGGAATCACAACTATCTAATAGCAGGGAGAGGCAAAGACTATCTTCAAGCTCTGAAATTGGTGTGAAAAATGCCCAGCCACTGGTAGCATCCGAGTCTTTCTCTAATGCTGTGTTAGAACCTTCTGCAGCACCATCTTCTGCCGGAATAGCTTCCCCCACTGTGAAAATTAATGAAAGTGAAAAGATGTGGCACTATCAGGATCCGTCTGGAAAAGTTCAGGGACCATTTTCCATGGTTCAGCTTCGAAAATGGAATAACACTGGTTACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAGTCCATGCCCTTAAAAGATGCCTTAGATGGAAAGTTTTCTAAGGAATCACCAGTGGTGGATAAAACTCTTCCTAAGGCTCAAATGGTGCATGATTTACATAATTCTTCCTCGTACCTTGGGAAGTCTCATTTGGCTGCACAACAAGGCATAATAGAAGGTCAAGTTGGAGCAAGACCAACATTTGATCAAAACAGTGGATCTTGGAATTCTTCACATAGTTCTCTGGGTTCTCTTGGCCAAACTACAGGAGGAAGTAGACCTTCTCCATTGGTGGTCGAGGTCCCCAAGACTACTTCAGATGGATGGGGTTCTAATGTCGGTGTTAGGAATGAATCAACAAATCTTCCTTCGCCCACTCCTCAAACTCCTTCAGTTGGGACTATGGTGCAGGGTTTTGAAAATAATTGGTCACCGACACCCATCTTAGGAAACCCAAACCTAAGCGGCCCTGGAGGTTTGCAAAATGCTGAAAATGGTTTGAGTTCACGAACTGTTATGATGTCAGCTTCTACTACTCAAGTACATCCTCAAGCAACCACGCTAGCACCTGGTCTGCAAAACCAGGTTGTTAGTAGCCATAACTCACATGCTGGAGCTCAAGGGTGGGGTTCTGGTTTGGTTTCAAAGGTAGAACCACAGGCCTTGGGAGCTACTCCATCTCAAAGGGTAGAACCTAATAATCATGCTACCATGCCTGTCCAGAACTCTGCCTCATTTATAACTGGAAATCCAACTGGGAATTTCCCTGCACAAAGCTATCCGGGCCAATCGAACATTTCAGCTCCAGCTCCACCTAATAATATGCCGTGGAACATGGGTGTTGTACAAAATCAAAATGCTACTGCTTGGGGCGGCATGCCAGGAAACCAGAATACCAGTCGGGGTGGGGGGGCTGTTCCCGCCAATGTGAATATGAACTGGATGCCAGCACCTGGAAATGCTAATCCAGGATGGGCTGCTGCTCCTAGTCAAGGGCCACCACCTCCCGTAAATGCAGCTGGATGGGTTGCACCTGGTCAAGGACGGCCACATGTAAATTCCAACATGGGTTGGGGTCAAGGGCACGCACCGGGAAATGCCAATCCCGGTTGGCCTGCATCGGTCGGGAATCAAGGTACACAAGGTACATGGGGAGGAGGTGAACATAATCATAATGGAGATAGACTTGGCAACCAGCGTGATCGTGGTACCCATGGTGGCAGAGATTCTGGTTATGGAGGTAAACCTTGGAGTAGGCAGACACCATTTAACAGCGGAGGAAGCAGAGGAGGAGGTTCATCCAGGCCTCCTTTCGGAGGACAGAGAGTTGCATGCAAGTTCAATGAAAGTGGACGTTGCAAGAAAGGGGATTCATGTGATTTTATGCACACTTAA 4410 0.4361 MDNKEDDEAPTLLSHDLSNTQDEGENVIADELPQEGEKAVDDIGLGIDYVASGKTEAAVVVSEEREVSDSVTEVEPIEGDEIFEEDKVTSAIDEAENVIQNQRVEEGTEVGDVESGKAEEEEDDADVGYDDSADEADVEIGHSQGTDDVIRDEKEVPNEEQEEEKELSVHEGDNDGVGDDTTQDTDTAALMEEGEGEEEAGDGDGDGVAQDIEEEEEQGGGGDGMEEDDEVREEQSESVSGGKRKRGPAKNSKTTRRVASKKKTEEDVCFICFDGGDLVLCNRRGCPKAYHPSCVNRDEAFFRTKGKWNCGWHLCSNCEKNAHYMCYTCTFSLCKGCIKDAIIFCVRGNKGFCETCMTTVMLIEQNEQGNTGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDELTEAKNPWKGSDMAASKDESPDELYDANNDKGSDSDNSYENVGSSRSKRRKGKKRAKSRSKEGNSYAATVLAADVTSADDRSEWSSKELLEFVMHMRNGDTSILSQFDVQALLLEYIKRNKLRDPCRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDYQGEDLQGSVVDTDVTHLDGDGNSDSYLKAGKDKRRKTRKKGDERGLHSNVDDYAAIDNHNINLIYLRRNLVEDLLEDTENFPDKAVGSFVRIRISGSGQKQDLYRLVQVAGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGNIQDKAFALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEVPEIHVDPKMDPSYESEEDEDEMNDKGQESYMRPRGSAAFGRKAREIVSPRSGSSDSWSGTRNYSNANRELNRNLSNKGFSMKGDDVFNSSEALNDAQLRDRESQLSNSRERQRLSSSSEIGVKNAQPLVASESFSNAVLEPSAAPSSAGIASPTVKINESEKMWHYQDPSGKVQGPFSMVQLRKWNNTGYFPADLRIWRTTEKQDESMPLKDALDGKFSKESPVVDKTLPKAQMVHDLHNSSSYLGKSHLAAQQGIIEGQVGARPTFDQNSGSWNSSHSSLGSLGQTTGGSRPSPLVVEVPKTTSDGWGSNVGVRNESTNLPSPTPQTPSVGTMVQGFENNWSPTPILGNPNLSGPGGLQNAENGLSSRTVMMSASTTQVHPQATTLAPGLQNQVVSSHNSHAGAQGWGSGLVSKVEPQALGATPSQRVEPNNHATMPVQNSASFITGNPTGNFPAQSYPGQSNISAPAPPNNMPWNMGVVQNQNATAWGGMPGNQNTSRGGGAVPANVNMNWMPAPGNANPGWAAAPSQGPPPPVNAAGWVAPGQGRPHVNSNMGWGQGHAPGNANPGWPASVGNQGTQGTWGGGEHNHNGDRLGNQRDRGTHGGRDSGYGGKPWSRQTPFNSGGSRGGGSSRPPFGGQRVACKFNESGRCKKGDSCDFMHT* 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1355 1469 SMART gyf_5 968 1023 IPR003169 GO:0005515
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1070 1099 - -
Lan3g1355 1469 Gene3D SWIB/MDM2 domain 477 571 IPR036885 -
Lan3g1355 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 360 IPR013083 -
Lan3g1355 1469 SUPERFAMILY SWIB/MDM2 domain 487 563 IPR036885 -
Lan3g1355 1469 SUPERFAMILY GYF domain 959 1020 IPR035445 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 899 925 - -
Lan3g1355 1469 Pfam GYF domain 970 1010 IPR003169 GO:0005515
Lan3g1355 1469 ProSiteProfiles SWIB/MDM2 domain profile. 481 564 IPR003121 -
Lan3g1355 1469 Pfam Plus-3 domain 628 731 IPR004343 GO:0003677
Lan3g1355 1469 MobiDBLite consensus disorder prediction 418 433 - -
Lan3g1355 1469 CDD GYF 967 1020 IPR003169 GO:0005515
Lan3g1355 1469 Gene3D - 625 753 IPR036128 GO:0003677
Lan3g1355 1469 CDD Bbox1 314 340 - -
Lan3g1355 1469 ProSiteProfiles Plus3 domain profile. 623 756 IPR004343 GO:0003677
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1110 1135 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 798 817 - -
Lan3g1355 1469 ProSitePatterns Zinc finger PHD-type signature. 269 329 IPR019786 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1069 1135 - -
Lan3g1355 1469 SMART rtf1 623 733 IPR004343 GO:0003677
Lan3g1355 1469 Pfam SWIB/MDM2 domain 489 562 IPR003121 -
Lan3g1355 1469 SUPERFAMILY Plus3-like 624 752 IPR036128 GO:0003677
Lan3g1355 1469 CDD PHD5_NSD 268 313 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 798 870 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1398 1413 - -
Lan3g1355 1469 Gene3D - 968 1027 IPR035445 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1376 1392 - -
Lan3g1355 1469 SMART swib_2 489 567 IPR019835 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 412 465 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1 24 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 115 134 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1350 1448 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 1422 1436 - -
Lan3g1355 1469 CDD SWIB-MDM2_like 489 562 - -
Lan3g1355 1469 ProSiteProfiles Zinc finger C3H1-type profile. 1444 1469 IPR000571 GO:0046872
Lan3g1355 1469 ProSiteProfiles GYF domain profile. 967 1021 IPR003169 GO:0005515
Lan3g1355 1469 SUPERFAMILY FYVE/PHD zinc finger 260 313 IPR011011 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 589 612 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 97 258 - -
Lan3g1355 1469 PANTHER UNCHARACTERIZED 78 1469 - -
Lan3g1355 1469 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 78 1469 - -
Lan3g1355 1469 SMART PHD_3 268 314 IPR001965 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 855 870 - -
Lan3g1355 1469 ProSiteProfiles Zinc finger PHD-type profile. 266 332 IPR019787 -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 135 177 - -
Lan3g1355 1469 MobiDBLite consensus disorder prediction 190 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1355 Lan-Chr3 25297759 25306116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1355 266 337 PHD Transcription Factor Family AT5G36670 36.000 3.04e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lan3g1355 Plus-3 4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1355 - - gmx:121174757 1692.17