Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1350 ATGGCTAAACCCAAAGCTGCAAAACGAACCCTAGAGTCCTACATAGTCAAGCACATCAACAAATCAATTAAAGCTGGTGATTGTGTGATGATGCGGCCATCTGATCCATCTAAACCGTCATATGTTGCGAGGATCGAACGGATTGAAGGTGATTGGCGAGGCGCGAATGTGAAGATTCATGTCCAGTGGTATTATCGGCCGGAGGAGTCGATTGGTGGCCGCCGTCAATTTCACGGCTCCAAGGAGTTGTTCCTATCTGATCACTTTGATATTCAGAGCGCAGACACGATTGAATCTAAATGTACTGTTCACAGCTTCAAGAGGTACAACAAGCTTGATGCTGTTGGAAACGATGATTTCTTCTGCCGTTTCGAGTACAATTCCTCCACTGGTGCATTCAATCCTGATAGAGTCGTTGTGTATTGTAAATGTGAGATGCCTTACAATCCTGATGACTTAATGGTCCAGTGTGAGGGATGCAGCGACTGGTTTCATCCTGCTTGTATAGACATGACTGCGGAGGAAGCCAAGAGACTTGACCACTTCTTTTGTGAAAGTTGCTCAGCTGAAGGTCAAAAGAAGTTGCAAAATTCTCATTCTTCTGTGAGACTCTCAGATACAAAGGTGGATGCTAAACGCCGTAGAAGGTAA 651 0.4501 MAKPKAAKRTLESYIVKHINKSIKAGDCVMMRPSDPSKPSYVARIERIEGDWRGANVKIHVQWYYRPEESIGGRRQFHGSKELFLSDHFDIQSADTIESKCTVHSFKRYNKLDAVGNDDFFCRFEYNSSTGAFNPDRVVVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTAEEAKRLDHFFCESCSAEGQKKLQNSHSSVRLSDTKVDAKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1350 216 Gene3D - 2 135 IPR043151 -
Lan3g1350 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lan3g1350 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lan3g1350 216 SMART PHD_3 141 188 IPR001965 -
Lan3g1350 216 Pfam BAH domain 23 136 IPR001025 GO:0003682
Lan3g1350 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Lan3g1350 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Lan3g1350 216 Pfam PHD-finger 141 189 IPR019787 -
Lan3g1350 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lan3g1350 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 202 IPR013083 -
Lan3g1350 216 MobiDBLite consensus disorder prediction 197 216 - -
Lan3g1350 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Lan3g1350 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1350 Lan-Chr3 25252785 25256966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1350 41 133 Core DNA Replication Machinery Family AT4G14700 30.108 9.58e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan3g1350 BAH 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1350 - - gmx:100787968 418.313