Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1341 ATGGACATTTTGAGTGAACAGTGTTGGAAACAAGATCAACACCAACAACAAGGTTACTTTTCTGTGGCCAAGATCAACTCTTCAATTGGAAAAGAGAGTTTTAAGAAGACAAAAGCTAATAAGCCTCACAATTCCACCAAGGTTGTTGCAGAAATGGATAAGAAATATAAGAGGAACAAAGTAGGTTCTAATGATGAGGAATCGAAAAGAATGAAGAAGAATGAAACATGTTCAGATACTTCAAAGGAAAACTCAAAAGGCTCTTATGCTCAAAAGGGTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAATTAGAAGAGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGTTGCAACAAAGTTACAGGAAAAGCTGGAACACTTGATGAAATCATCAATTATGTTCAGTCTCTTCAACAACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTATGAACCCAAATCTGGACTACAACATTTATGATATGTTTACCAAAGAGATGTTTCCTACTTGTACTCCAAGTTATTCAACTATAGGGATATCATCAGACATGACTAACCCTGCATATCTTCAATTCAAGTCACAACAAGAAATGGTTTCAAGTTGTGGATTTGATACAGTGAAAAACCCTCCAGAACTGCATGGGTCAATACCTGAAACATGTCTTGACTCATCCAATTTCAATCAAATTCTACCCCACTCTTCAACATGGGAAGGTGATTTCCAAAACCTTTACACTATGGCTTTTGATCAAGCAATAGCAACACCAACACCTTTTTCTTCTCAGCAATTCACAGGTCTAGTTGAATATAGCAATCTGATGGAAATGTAG 882 0.3707 MDILSEQCWKQDQHQQQGYFSVAKINSSIGKESFKKTKANKPHNSTKVVAEMDKKYKRNKVGSNDEESKRMKKNETCSDTSKENSKGSYAQKGDYIHVRARRGQATDSHSLAERIRREKISERMKYLQDLVPGCNKVTGKAGTLDEIINYVQSLQQQVEFLSMKLAAMNPNLDYNIYDMFTKEMFPTCTPSYSTIGISSDMTNPAYLQFKSQQEMVSSCGFDTVKNPPELHGSIPETCLDSSNFNQILPHSSTWEGDFQNLYTMAFDQAIATPTPFSSQQFTGLVEYSNLMEM* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1341 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 154 IPR011598 GO:0046983
Lan3g1341 293 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 23 273 - -
Lan3g1341 293 CDD bHLH_AtBPE_like 94 179 - -
Lan3g1341 293 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 23 273 IPR024097 GO:0006355
Lan3g1341 293 MobiDBLite consensus disorder prediction 47 80 - -
Lan3g1341 293 Pfam Helix-loop-helix DNA-binding domain 108 155 IPR011598 GO:0046983
Lan3g1341 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 171 IPR036638 GO:0046983
Lan3g1341 293 MobiDBLite consensus disorder prediction 33 93 - -
Lan3g1341 293 Gene3D - 101 175 IPR036638 GO:0046983
Lan3g1341 293 SMART finulus 110 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1341 Lan-Chr3 25205451 25208675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1341 41 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 49.339 1.16e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g1341 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1341 - - gmx:100798855 308.531