Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1330 ATGGAGAATGGTGAATCTGAGAAACCCTCTGATATGGAGCTTGTTGTTTATGACGATAACAAGAATGACGATTCTACCCTCACTCCTCAACATCAACATCAAAATCTTCATCTCCATGATTCCAAATCAATTACTCAAAATGATTCACACCACAACAATCTTCCCAAGACTAAAGAAATCAAATCTGTGTTAAACGATAGTGAGATGAGTGAATATGAGGAAACTGGTACCCCTTTGGAGCAACAAGCTTTTATGAAAGAGTTGCAAACTTTTTATAGAGAAAGGTCTTTGGAATTTAAGCCTCCTAAGTTTTATGGTGTTCCACTCAATTGCCTCAAGTTATGGAGAGCTGTTATCAAACTGGGTGGCTATGATATCGTAACTGGATCCAAGTTGTGGCGACTAGTAGGAGAGTCTTTCCATCCCCCTAAGACATGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAGACTGGGGAGCTGCAGCTACCTGTTGGATCATTCCATCAACCTTCAAGTGTAGAAAAGGAGACCACTGTTTACCAGACTCCAGGCTCAGGTAGAGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCCCAGCGCCTTCAATATGGTGAGGTTGCTGAGCAAGTTAGTAAGGACAAGAACTTCAGTCCCACTACAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGTGATTAATAAACAGAGGACACCGACTGGTCTAGAGCAGGCTGAGAAAGCTTCAAATATTGACGGAGATAGGCAATTGGTCACAGCAGTTGTGGACATAGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACCAAGGATTGTTTTGAGGTGTATGCACTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCCGATCCAGTTGGACGTGTCGTTATAACTGGTCACCCAGAACAGGTTGATAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCAGCAAGAGTTGATCCATTGCAGACAACAGCTGTCGTTAGTTTGCACGGTCGTCTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTATATGA 1134 0.4409 MENGESEKPSDMELVVYDDNKNDDSTLTPQHQHQNLHLHDSKSITQNDSHHNNLPKTKEIKSVLNDSEMSEYEETGTPLEQQAFMKELQTFYRERSLEFKPPKFYGVPLNCLKLWRAVIKLGGYDIVTGSKLWRLVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKRETGELQLPVGSFHQPSSVEKETTVYQTPGSGRARRDAAARAMQGWHAQRLQYGEVAEQVSKDKNFSPTTKREKNLKSIGVINKQRTPTGLEQAEKASNIDGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRVVITGHPEQVDNPWGITPFKKVVNLPARVDPLQTTAVVSLHGRLFVRVPFEQGAI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1330 377 SMART ARID_2 75 165 - -
Lan3g1330 377 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 20 374 IPR045147 GO:0006357
Lan3g1330 377 SUPERFAMILY ARID-like 73 176 IPR036431 GO:0003677
Lan3g1330 377 SUPERFAMILY HSP20-like chaperones 285 372 IPR008978 -
Lan3g1330 377 Gene3D - 79 177 IPR036431 GO:0003677
Lan3g1330 377 Gene3D - 274 376 IPR008978 -
Lan3g1330 377 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 276 377 IPR002068 -
Lan3g1330 377 CDD ACD_sHsps-like 291 371 - -
Lan3g1330 377 ProSiteProfiles ARID domain profile. 78 169 IPR001606 GO:0003677
Lan3g1330 377 MobiDBLite consensus disorder prediction 1 36 - -
Lan3g1330 377 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 20 374 - -
Lan3g1330 377 MobiDBLite consensus disorder prediction 1 26 - -
Lan3g1330 377 Pfam Hsp20/alpha crystallin family 292 373 IPR002068 -
Lan3g1330 377 Pfam ARID/BRIGHT DNA binding domain 81 165 IPR001606 GO:0003677
Lan3g1330 377 SMART bright_3 79 170 IPR001606 GO:0003677
Lan3g1330 377 CDD ARID 80 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1330 Lan-Chr3 25122586 25129084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1330 63 374 ARID Transcription Factor Family AT1G76510 69.427 8.51e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan3g1330 HSP20 1.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1330 - - lang:109344023 759.985