Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1329 ATGGGTCGTGGAAGAATGGAGCTGATAAAGAAGGAGAAAAATCGCATGATAACATTCCAAAAGAGAAAGGAAGGGTTAATGAAGAAAGCTTATGAACTTTCTACTCTTTGTGGCATTGATGTTTGTGTAATTATCTATGCCCCACATTTTAATGACCAAGGTTCTCAACTTCAGACATGGCCTAAAGATACCAAAGAGGTAAACCGCATTATTGAAAAGTATAAGGACACCACTATTGATAGGAGTCCTAAGATCTATGATGTGCAAGAATATTATAAGGATAGGGTTAAAAAAGTTGAAAGTGAAATAGCTAAAGTCAGAAGAGAAAAGTTGAAGATTATGTATCCAACTTGGGATGAATCTTTCAATGTCATGGGAGAACAACAATTGAGGATGTTTGTTACTATGTTGGATAATAAGCTTGATGTTTGTAATCAAAGAATCAATGTGTTGAAACAAGATCATAAGGGAAGGGTAATAACAGAAGAAGCACCATTCAAAAGTGAGATATGTGAAGGACAAGTTTATGGTCCTTCTCATATGAAGCAAGATAGTGATAACAAGAACCATATACCATTTTACACTTTCAACCATGGCCAGAATTCTCAGTCATCTATGCTTCATTTTGATCAAAATATGCAAACAATGTTGTGGCCATATGATACTTCTATGCAGACTCCTAATAATTCTCAGAATCTGCAGAATGAAGCAGCTTTTCAGATTCAACCACAAGGGTTTCAGATTAATGGATTTTATGATACAAATGCACTTCAATCTCAAATGTTGAACTACATGCATGGATGGAATAATAGGCAATAA 819 0.3492 MGRGRMELIKKEKNRMITFQKRKEGLMKKAYELSTLCGIDVCVIIYAPHFNDQGSQLQTWPKDTKEVNRIIEKYKDTTIDRSPKIYDVQEYYKDRVKKVESEIAKVRREKLKIMYPTWDESFNVMGEQQLRMFVTMLDNKLDVCNQRINVLKQDHKGRVITEEAPFKSEICEGQVYGPSHMKQDSDNKNHIPFYTFNHGQNSQSSMLHFDQNMQTMLWPYDTSMQTPNNSQNLQNEAAFQIQPQGFQINGFYDTNALQSQMLNYMHGWNNRQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1329 272 Coils Coil 89 109 - -
Lan3g1329 272 Gene3D - 11 100 IPR036879 GO:0003677|GO:0046983
Lan3g1329 272 PANTHER MADS BOX PROTEIN 2 215 - -
Lan3g1329 272 CDD MADS_SRF_like 6 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan3g1329 272 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lan3g1329 272 SUPERFAMILY SRF-like 3 97 IPR036879 GO:0003677|GO:0046983
Lan3g1329 272 PRINTS MADS domain signature 1 21 IPR002100 GO:0003677|GO:0046983
Lan3g1329 272 PRINTS MADS domain signature 21 36 IPR002100 GO:0003677|GO:0046983
Lan3g1329 272 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 2 215 - -
Lan3g1329 272 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Lan3g1329 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1329 Lan-Chr3 25121136 25121975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1329 1 147 Type I MADS-box Gene Family AT5G55690 36.601 3.63e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan3g1329 SRF-TF 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1329 - - lang:109350953 282.337