Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1325 ATGTCGCATCAACATCTCAATATTTTCAAACCCTTGGAAACTCAGAATCCGGTGGGAAACTCAGAATCTGTGAAAAGAAAGAGAGGAAGGCCAAAGAAAAATGGGTCCAATGGTTCAATTACAACTTCTAGTTTAGGTCATTCTGGATCAGTAGATACTCCTTTCACTACTGTTGCTGATTCTCCCTCAACAGTGAAAAAGAGAGGAAGGCCTCGTGGTTCAATTAATAAGCAACGTGATATCAAAGAACCAGAAGATAAATCAACACATCATGTTATCACTGTGAAAGCTGGGGAGTGTATTTCGACAAAGATAATGGCCCTTTCTTTTGAAGTGAATAGCAATCTTTGCATATTAACTGCGAATGGAACCATTTCTCGTGCAACACTTCGTCATCCTTCATCTGGATCAGTGACTTATGAGGGACAATACGATATCATAACACTTGGTGGGTCATTGCTGTTGCTTTCTGATAAAAGTGGTTCATCCCATAGGTCTGGTGGATTGAATGTATCTTTGTTTGGGCCAAATGGTCTTGTACAAGGTGGTGTTACCGGTGGTTTGATTGCTGCTTCCACTACTCAGGTAGTTTTATTGAGCTTTCCAGGTAACTATTGCAGTGAATCCGAGTTGGTGAATCAACCAACAAGTTCATCTGCCCCATTGGGTTAA 672 0.4092 MSHQHLNIFKPLETQNPVGNSESVKRKRGRPKKNGSNGSITTSSLGHSGSVDTPFTTVADSPSTVKKRGRPRGSINKQRDIKEPEDKSTHHVITVKAGECISTKIMALSFEVNSNLCILTANGTISRATLRHPSSGSVTYEGQYDIITLGGSLLLLSDKSGSSHRSGGLNVSLFGPNGLVQGGVTGGLIAASTTQVVLLSFPGNYCSESELVNQPTSSSAPLG* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1325 223 Gene3D - 89 214 - -
Lan3g1325 223 ProSiteProfiles PPC domain profile profile. 84 222 IPR005175 -
Lan3g1325 223 CDD DUF296 91 201 IPR005175 -
Lan3g1325 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 212 IPR039605 GO:0003680
Lan3g1325 223 MobiDBLite consensus disorder prediction 74 90 - -
Lan3g1325 223 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 202 IPR005175 -
Lan3g1325 223 MobiDBLite consensus disorder prediction 1 90 - -
Lan3g1325 223 Pfam AT hook motif 66 77 IPR017956 GO:0003677
Lan3g1325 223 Pfam AT hook motif 25 35 IPR017956 GO:0003677
Lan3g1325 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 21 212 - -
Lan3g1325 223 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g1325 223 MobiDBLite consensus disorder prediction 34 63 - -
Lan3g1325 223 SUPERFAMILY AF0104/ALDC/Ptd012-like 89 205 - -
Lan3g1325 223 SMART AT_hook_2 25 37 IPR017956 GO:0003677
Lan3g1325 223 SMART AT_hook_2 65 77 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1325 Lan-Chr3 25103523 25105426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1325 21 201 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.792 6.05e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1325 - - lang:109342461 426.402