Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1310 ATGAAAGGTGGAAAATCAAAGACCGAGTCCAAAAAAGCTGATCCTAAACTTGCTGTGAATAAGAAGGGTGGCGCCACCACTAAAGGTGCTCGGAAACCAGCCAAGGGAAAGGCGGCGAAGGATCCTAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAGTTCAACAAGGAAAATCCTGACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCCGGAGCAAAGTGGAAGACTATGTCTGACACTGATAAAGCACCGTATGTTGCAAAAGCCGGGAAACGAAAGCAAGACTATGAGAAGAGCATGAAAGCCTATAACAAGAAGCAGGAAGAAGGTCCTACTGCTGCTGATGAAGAATCTGAGAAGTCATTATCTGAGGTGGAGGATGATGATGATGATGAGGATGATGAGGATGAGGATGACGACGAATAG 456 0.4605 MKGGKSKTESKKADPKLAVNKKGGATTKGARKPAKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKTMSDTDKAPYVAKAGKRKQDYEKSMKAYNKKQEEGPTAADEESEKSLSEVEDDDDDEDDEDEDDDE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1310 151 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Lan3g1310 151 Gene3D High mobility group box domain 29 139 IPR036910 -
Lan3g1310 151 Coils Coil 96 116 - -
Lan3g1310 151 MobiDBLite consensus disorder prediction 1 18 - -
Lan3g1310 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 148 - -
Lan3g1310 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Lan3g1310 151 MobiDBLite consensus disorder prediction 1 51 - -
Lan3g1310 151 MobiDBLite consensus disorder prediction 95 129 - -
Lan3g1310 151 SMART hmgende2 44 115 IPR009071 -
Lan3g1310 151 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lan3g1310 151 MobiDBLite consensus disorder prediction 130 151 - -
Lan3g1310 151 CDD HMGB-UBF_HMG-box 45 111 - -
Lan3g1310 151 MobiDBLite consensus disorder prediction 64 151 - -
Lan3g1310 151 SUPERFAMILY HMG-box 34 124 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1310 Lan-Chr3 25020036 25021903 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan3g1310 HMG_box 1.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1310 K25507 - jre:109018013 181.8