Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1304 ATGGGTGATGATGCTACCATTTTGGATGATGGAACAATCTCAATGGATTTTGATTACATGAATGAACTTTTCTTTGATGGGTGTTGGTTGGAAACCACTGCTGAGGAATTTGATTTTCCATTATTTGATTCTTCATTATTCTCATGGAATGTTTTGGAAAATGAACATGAATCACAAGAAGCTCTTTTTAGTACACAAGACAACATAGTTAATGTTGATGTTAGTTCCAATAAGCAAAATCAATCTGAAATTCAATCACTTGAAGGTGCTTCTGAAGGGTTTACAAGGTGGTGGATTGCTCCAACACCTAATAATCCAGGAACAAGTTATTCTGTAATGGAAAAGTTAATGAAGGGACTCAAGTGTATCCATGATTTGAATAGGAACAAAGATATGCTTATACAAATTTGGGTGCCAGTTAATAGAGGGGGTAAGCAGATTCTTACAACTAATGATCACCAATTCTGCCTCGGAACCAGGTCTACAAACCTTGCAAAGTACCGAGAAATCTCGATGAGATATCATTTTTCGACCGAGGAGGATGGTTCAAAGGGGTTGGTGCCAGGATTGCCTGGTAGAGTATTTAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGACTCTTTAGGATTGATGAGTATCCTAGAGTTGACCATGCTCAAGAGTATGAAGTACGCGGAACGTTAGCACTTCCGATTTTTGAGCAAGGGAGCAGGACTTGCTTGGGTGTTATTGAGGTTGTGATGACTACCTCACAGCTCAATTATCGCCCCGAACTTGAGAGTGTTTGCAAAGCGCTCGAGGCTGTTGATCTTAGAAGCTCAAAACTTTCAAGCATTCCGGATTTGAAGGCATCCCACAAGTCTTATGAGGCTGTTCTACCCGAGATTCGAGAGGTATTCAGATCAGCATGTGAAATGCACAAACTACCTTTAGCTCAAACTTGGATCCCATGCATCCAACAAGGAAAAGAGGGGTGTCGGCACTCGGAAGATAATTACTTACACTGCATATCTCCTGTGGAGCATGCTTGCTATGTTAATGATCCCTCTATCCGCGCTTTCCATGATGCTTGCTCCGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGAGGTGCGTATATGACAAACCAACCATGCTTCTCAAGCGACATAACCTCCTTAAGCAAGACAGACTATCCACTATCTCATCATGCAAGAATGTTCGGATTGCAGGGTGCAGTTGCCATATGCCTCCGAAGCATCTACAATAGTATGGATGACTATGTTCTAGAGTTCTTCTTGCCTGTGAATTGCATCGACAGTGAAGAGCATAAAAGGATGCTTACTTCATTGTCCATGATTATTCAAAGGGTTTGTCATAGCTTGAGGGTTATAACCGATAAGGAATTGGAGAGCGAAACTAACTTATTAGTTGATGAAGTGACAGCCCTTGCAGATAATAGATCTCGTAGGACTGCGATTTGTAAGGAAGTTCTACAGGATGGGATGGTTGATTCATTGGATACTGAAGAAAAATCAAAGGGCGCAAAATTCTCTGATCTAAGGCAACAACAAGATTTGAAAGGAAACCTTGACAGTGTTGGGGGGTGTCCTACTTTTGGCGAAGGTAACTTATCAAGTGTGGGAATAAGTAAAACCGAGGAGAAAAAACGGACCAAAGCTGATAAAACTATCACTCTGCAAGTTCTTCAGCAACATTTCGCTGGAAGCCTGAAAGATGCTGCGAAGAACATTGGTGTTTGCACTACAACTTTGAAAAGGATCTGCAGGCGACATGGGATAAAGCGTTGGCCTTCTCGAAAGATAAAGAAGGTTGGTCACTCCTTACAAAAACTTCAACTTGTCATAGACTCAGTTCAAGGTGCATCTGGTGCATGTCAAATAGATTCCTTCTATTCGAACTTCCCGGACCTACTTTCTCCAAATTTATCAGGAACGGACATGTTATCCACCTTGAAGCAAAGTGATAATCCGAACTCATTAAGCCCAAAAGATGTCTTAAAATCACCCTCTTCGTCATGCAGTCAGAGTTCCATTTCAAGCCATCTTTGTTCTACCATGTCAGAGCAACAATACCACACAAGTAATGCTGTTGAAGGTAACAAAGATTCCATAGTTGTTGAAGATTCTGCTAATGTTGCGTCGACGAGGATCAGAAATGAAGCAGAGCTTAGAAGCCTAGTGAGTCAAGATAATGAAGAAAAACTCTTGCCAATATCACTAAGCCAAGAAACACTTGGTGAACAACAACACCCTAAAACAAAAGGAAATGCAACTAAAAAGGAGGAGTCTCATAGAGTAAAAGTGACATATGGAGATGAGAAAAGCCGGTTTCGGATGCCAACGACTTGGAGTTATGAAAATCTTTTGCAGGAAATTGGTATGAGATTTCACATAAGTAACATGAGCAAATTTAATGTCAAGTATTTGGATGATGATTGTGAGTGGGTTTTACTAACTTGTGATGCAGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAACAGAACCATTAAACTTGCTCTGCAAGTTTCTAATCTTGGTCTGAGAAGTTCATTAGAGTTTACATAG 2583 0.4081 MGDDATILDDGTISMDFDYMNELFFDGCWLETTAEEFDFPLFDSSLFSWNVLENEHESQEALFSTQDNIVNVDVSSNKQNQSEIQSLEGASEGFTRWWIAPTPNNPGTSYSVMEKLMKGLKCIHDLNRNKDMLIQIWVPVNRGGKQILTTNDHQFCLGTRSTNLAKYREISMRYHFSTEEDGSKGLVPGLPGRVFKEKVPEWTPDVRLFRIDEYPRVDHAQEYEVRGTLALPIFEQGSRTCLGVIEVVMTTSQLNYRPELESVCKALEAVDLRSSKLSSIPDLKASHKSYEAVLPEIREVFRSACEMHKLPLAQTWIPCIQQGKEGCRHSEDNYLHCISPVEHACYVNDPSIRAFHDACSEHHLLKGQGVAGGAYMTNQPCFSSDITSLSKTDYPLSHHARMFGLQGAVAICLRSIYNSMDDYVLEFFLPVNCIDSEEHKRMLTSLSMIIQRVCHSLRVITDKELESETNLLVDEVTALADNRSRRTAICKEVLQDGMVDSLDTEEKSKGAKFSDLRQQQDLKGNLDSVGGCPTFGEGNLSSVGISKTEEKKRTKADKTITLQVLQQHFAGSLKDAAKNIGVCTTTLKRICRRHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGACQIDSFYSNFPDLLSPNLSGTDMLSTLKQSDNPNSLSPKDVLKSPSSSCSQSSISSHLCSTMSEQQYHTSNAVEGNKDSIVVEDSANVASTRIRNEAELRSLVSQDNEEKLLPISLSQETLGEQQHPKTKGNATKKEESHRVKVTYGDEKSRFRMPTTWSYENLLQEIGMRFHISNMSKFNVKYLDDDCEWVLLTCDADLEECIDVCQSSENRTIKLALQVSNLGLRSSLEFT* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1304 860 SUPERFAMILY CAD & PB1 domains 763 847 - -
Lan3g1304 860 ProSiteProfiles RWP-RK domain profile. 546 627 IPR003035 -
Lan3g1304 860 MobiDBLite consensus disorder prediction 743 767 - -
Lan3g1304 860 Pfam PB1 domain 767 848 IPR000270 GO:0005515
Lan3g1304 860 PANTHER PROTEIN NLP8 55 856 IPR045012 GO:0003700
Lan3g1304 860 MobiDBLite consensus disorder prediction 655 676 - -
Lan3g1304 860 Gene3D - 762 848 - -
Lan3g1304 860 PANTHER PROTEIN NLP4 55 856 - -
Lan3g1304 860 SMART PB1_new 766 849 IPR000270 GO:0005515
Lan3g1304 860 CDD PB1_NLP 767 847 IPR034891 -
Lan3g1304 860 ProSiteProfiles PB1 domain profile. 766 849 IPR000270 GO:0005515
Lan3g1304 860 Pfam RWP-RK domain 559 607 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1304 Lan-Chr3 24973445 24977374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1304 6 850 NLP Transcription Factor Family AT1G20640 47.619 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan3g1304 PB1 2.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1304 - - lang:109328153 1308.89