Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1301 ATGGATTTCGCCATTGATATGTTCAAGCAAACCAAAAAAACCAAAGGTCGCAAGAAGATTGAGATAAAGAAGCTTGACAAGAACTCCAACAAGCAAGTAACATTCTCAAAACGACGTGCAGGACTCTTCAAAAAAGGTAGTGAACTCTGCGTTTTATGCAATGTTGATGCAGCTATCATTGTGTTTTCTCCTGCAGACAAATTATTTTGTTTTGGCCAACCTGATGTTGAAACCCTAATCACTCGTTACCTTAGAAGAACAACAACAGAGTTGGATCCTAAAATCCCAAGAAGTGAAACAGTGTCATATGAAGAACATAATAAGGAATATGATGAAGCAATGAAGAAGTTGGAGTTGGAGAAAAAGGAATTGGCAAATTCTGCTAAGGATTGGAAAAAAGGGAATTGGTGGAATGAGGCAATACATGAAATGAGTGTTGAAGAGTTGGAACAGTTTATGGTGGCAGTTTATGAGTTAAGAAGGAAGTTAGATGAAAGAAGAAGTGAGATAATGATGCCAATGTTATAG 528 0.3712 MDFAIDMFKQTKKTKGRKKIEIKKLDKNSNKQVTFSKRRAGLFKKGSELCVLCNVDAAIIVFSPADKLFCFGQPDVETLITRYLRRTTTELDPKIPRSETVSYEEHNKEYDEAMKKLELEKKELANSAKDWKKGNWWNEAIHEMSVEELEQFMVAVYELRRKLDERRSEIMMPML* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1301 175 Coils Coil 100 134 - -
Lan3g1301 175 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 PANTHER MADS BOX PROTEIN 12 172 - -
Lan3g1301 175 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Lan3g1301 175 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lan3g1301 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 12 172 - -
Lan3g1301 175 SUPERFAMILY SRF-like 16 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1301 Lan-Chr3 24960990 24961669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1301 11 152 Type I MADS-box Gene Family AT5G60440 41.290 1.14e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan3g1301 SRF-TF 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1301 - - cam:101502875 196.438