Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1270 ATGGATGATCCTGGTCATCGTGAAAATGGAAGGCATAAACCAGATCAATATAAATCTGCTCAAGGACAGTGGTTGATGCAACATCAGCCTTCTATGAAGCAGATTATGGCACTTATGGCAGAAAGAGATGCAGCCATTCAGGAAAGAAATCTGGCTCTTTCTGAGAAAAAGGCAGCACTTGCAGAGCGTGACATGGCATTCCTGCAGCGAGATACTGCACTTGCAGAACGAAATAATGCAATCATGGAACGAGATAACGCAATTGCAGCTCTTCAGTATCGAGAGAACTCCTTAACCACTGGTAGTATGTCAGCATGTCCTCCAGGATGCCAAATCTCACGTGGTGTCAAGCATATGCATCATCCTCAGCAACAGGTACACCACTTACATAACATGGGTGATGCTTCTTATGGCACACAGGAAATGACCACAACTGATGCCCTCCCAGAAGCACCCATCCCTTCAGAGGCTGGTAAATCAAGGCGTGCCAAACGACCAAAGGAAGCTAAGTCACCGAATAAGAAGGCTTCAAAAACTGCAAGAAAAGTCAAGATGGAGAGTGAAGACTTGAATGGCATGATGTTTGGCAAGACGCATGAGTGGAAGAGTAGTCAGGAAGTGTTTAACGGAGGTGATGATCTTAACAAGCAGTCAGTGGTGTCAAAGGCTGATTGGAAAGGCCAGGACTTGGGGCTGAATCAAGTAGCATATGATGAGTCTACCATGCCAGCGCCGGTTTGCTCTTGTACTGGTGTTCTGAGGCAGTGCTACAAATGGGGTAATGGGGGTTGGCAGTCTGCTTGTTGCACAACAACCCTGTCAATGTATCCACTTCCAGCAGTGCCCAACAAGAAGCATGCTCGGGTCGGTGGTCGGAAGATGAGTGGAAGTGCTTTCAATAAACTGCTTAGTCGGCTAGCTGCAGAAGGTCATGATCTGTCAAACCCAGTTGACCTCAAGGACAATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG 1008 0.4673 MDDPGHRENGRHKPDQYKSAQGQWLMQHQPSMKQIMALMAERDAAIQERNLALSEKKAALAERDMAFLQRDTALAERNNAIMERDNAIAALQYRENSLTTGSMSACPPGCQISRGVKHMHHPQQQVHHLHNMGDASYGTQEMTTTDALPEAPIPSEAGKSRRAKRPKEAKSPNKKASKTARKVKMESEDLNGMMFGKTHEWKSSQEVFNGGDDLNKQSVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKKHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1270 335 PANTHER - 1 205 IPR010409 -
Lan3g1270 335 PANTHER - 209 335 IPR010409 -
Lan3g1270 335 Pfam GAGA binding protein-like family 1 335 IPR010409 -
Lan3g1270 335 MobiDBLite consensus disorder prediction 146 183 - -
Lan3g1270 335 MobiDBLite consensus disorder prediction 1 15 - -
Lan3g1270 335 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 205 - -
Lan3g1270 335 PANTHER PROTEIN BASIC PENTACYSTEINE6 209 335 - -
Lan3g1270 335 SMART GAGA_bind_2 1 335 IPR010409 -
Lan3g1270 335 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g1270 335 Coils Coil 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1270 Lan-Chr3 24754695 24757837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1270 65 335 BBR or BPC Transcription factor family AT5G42520 65.411 1.32e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lan3g1270 GAGA_bind 1.8e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1270 - - gmx:100783502 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1206 15 20514640 20517528 Lan3g1270 3 24754695 24757837 LSH
Lan14g0943 14 15839289 15842364 Lan3g1270 3 24754695 24757837 LSH