Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1246 ATGGCGAGTGGGTTTGGGGAATCAACAAGCAGGTCCCCTCCAAGCCCTTCCTACTCCAACAACAATAATAACAGTGATGCCGGCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGATCCAATAATTACTTTATGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAGATGGCTTCACTTCCACTCGAAGTCACGAGAATGCCCAGTGTGCAAGGCCCTTGTCGAGGAGGAGAAGCTGGTTCCCTTGTACGGGAGAGGAAAGACATCAACTGACCCAAGATCGAAATCTATTCCAGACGCTAATATTCCTCATCGCCCGGCTGGTCAAAGACCCGAAACTGCTCCTCCACCTGAATCAAATCATTTTCGTCAGCATGGGTTTGGATTCTCTGGTGGGCTAGGAGGGTTTGCGCCAATGGCAACTGCGAGATTTGGGAATCTCACATTTTCTGCAGCATTTGGTGCCTTCCTACCATCCTTATTTAACTTTCAGTTACATGGGATTCATGATGATGCCATGCATGGTGGAGCTGCTGGTTTTCCTTATGGATTTTCTAATTCATTTCACGGTGTCCATGCCCATAGATATCCTCTTCATGCAGGACAAGTGCAGCAAGATTTATTTCTGAAAAGGCTGTTTCTTTTTATTGTTTTCTGTGTTGTTCTTGTTTTTATTTGGCAATAG 690 0.4464 MASGFGESTSRSPPSPSYSNNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYRWLHFHSKSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPDANIPHRPAGQRPETAPPPESNHFRQHGFGFSGGLGGFAPMATARFGNLTFSAAFGAFLPSLFNFQLHGIHDDAMHGGAAGFPYGFSNSFHGVHAHRYPLHAGQVQQDLFLKRLFLFIVFCVVLVFIWQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1246 229 MobiDBLite consensus disorder prediction 86 123 - -
Lan3g1246 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lan3g1246 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Lan3g1246 229 PANTHER OS12G0636000 PROTEIN 2 229 - -
Lan3g1246 229 CDD RING-HC_AtRMA_like 30 74 - -
Lan3g1246 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Lan3g1246 229 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g1246 229 SUPERFAMILY RING/U-box 29 85 - -
Lan3g1246 229 SMART ring_2 32 72 IPR001841 -
Lan3g1246 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Lan3g1246 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1246 Lan-Chr3 24569525 24571147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1246 20 228 C3H Transcription Factor Family AT2G23780 59.346 1.28e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1246 K10666 - gmx:100527488 383.645