Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1222 ATGGTGGCAGCATACGAGGAAAGTCGTAGGAAAAGAATGGAAGAGAATAAGAAGAGAATGGAGGCACTGAATCTTCATCATCTTTCTAAATCTCTTCATAAGTCCACTTCTCCAAAACCTTCTCCTTCTAAACCTCGTACCCCAAACAAAGATAAAGAACTCGTTCTTGTAAGGAGATCTGGTCGTGTCGCCAATCTTCCTTCTCCTCTTTACAAACAAGTGCTTCTTGATCGCGTCACTATACCTAGAAGAAGTTATAACAGGCACAGGGATTATTCGAACCGGATATATGCTTCGGATGAAGATAGAGAGGAAGCTATGGAGAAAGCACAGAAGATAGAGTCGGATTTAGATTCTCAGTATCCTACTTTTATTAAGTCAATGCTCCAATCACATGTTAGTGGCGGATTCTGGCTGGGTCTTCCAGTCGATTTCAGCAGGAGAAATCTCCCGAAACGGGATGAGACAATTGATTTGATAGATGAGGATGGGAATGAATATCCAACAGTTTATTTGTCTCAAAAAAGAGGACTTAGTGGTGGATGGAGAGGTTTTGCAATTTCTCATGACCTAGCAGATGGGGATGCTTTAGTTTTTCAATTGATCAATCGCACTGCATTCAAGGTTTATATTGTTAGGGTGAATGGTCTGGCTGAGGAGGGTGAACAACATGAGTAA 678 0.4145 MVAAYEESRRKRMEENKKRMEALNLHHLSKSLHKSTSPKPSPSKPRTPNKDKELVLVRRSGRVANLPSPLYKQVLLDRVTIPRRSYNRHRDYSNRIYASDEDREEAMEKAQKIESDLDSQYPTFIKSMLQSHVSGGFWLGLPVDFSRRNLPKRDETIDLIDEDGNEYPTVYLSQKRGLSGGWRGFAISHDLADGDALVFQLINRTAFKVYIVRVNGLAEEGEQHE* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1222 225 Gene3D - 98 216 IPR015300 -
Lan3g1222 225 Coils Coil 3 23 - -
Lan3g1222 225 Pfam B3 DNA binding domain 124 213 IPR003340 GO:0003677
Lan3g1222 225 ProSiteProfiles B3 DNA-binding domain profile. 124 215 IPR003340 GO:0003677
Lan3g1222 225 MobiDBLite consensus disorder prediction 1 53 - -
Lan3g1222 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 219 IPR044837 -
Lan3g1222 225 SMART B3_2 124 215 IPR003340 GO:0003677
Lan3g1222 225 SUPERFAMILY DNA-binding pseudobarrel domain 117 216 IPR015300 -
Lan3g1222 225 MobiDBLite consensus disorder prediction 1 28 - -
Lan3g1222 225 CDD B3_DNA 122 213 IPR003340 GO:0003677
Lan3g1222 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN 4 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1222 Lan-Chr3 24404780 24407709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1222 4 215 B3 DNA Binding Superfamily AT3G19184 54.167 3.56e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan3g1222 B3 8.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1222 - - ccaj:109802561 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1159 15 20251632 20254811 Lan3g1222 3 24404780 24407709 LSH