Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1218 ATGGAACAGTTAAATTCTACACCTTCTGTGGATATGGACATGATGATGATGGAGTTTCCAGAATTCTCTGAAGTTTACGGCCAAAACGATACCGTTGCGGTGTTTGCTCCACCGTCTGAGCTTCGTGGCGGCGCTGCTAACAGCATCCGCAATAATATGTCACTAGCTGATTTAATTAATAACCCTCCTATGCCATGGTCTTCATTCACAAACTCACCATCCACTGCAATATCTTTTACCAATAACCCTACTCAAGTGCTTCAACAACAAGAACAAACTCCACCAGCCATGTTGTACATGAGTGAAACCGCAAACCCTTATGAGAAGCGGAAATCAATGGCAGCAATGAGGGAAATGATATTCAGAATAGCGTCCATGCAACCAATACACATAGACCCTGAGTCAGTGAAGCCACGAAAGCGGAAGAACGTGAAGATTTCAAAGGATCCTCAAAGCGTGGCGGCACGCCACCGTAGAGAAAGGATAAGCGAGAAGATAAGAATACTTCAGAGACTCGTGCCTGGAGGAACTAAAATGGACACTGCTTCAATGTTGGATGAAGCTATTCACTACGTCAAGTTTCTCAAATCTCAGGTCCAATCACTCCAACGAGTTTCTGTCACAAGTAATACAAGGCCAGTTCATGCTACAATGAATCCTCTACCTAAACCTTATCAATCAGGAAATGTTGAGTATTATGGAGATTATGCATGA 714 0.4328 MEQLNSTPSVDMDMMMMEFPEFSEVYGQNDTVAVFAPPSELRGGAANSIRNNMSLADLINNPPMPWSSFTNSPSTAISFTNNPTQVLQQQEQTPPAMLYMSETANPYEKRKSMAAMREMIFRIASMQPIHIDPESVKPRKRKNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQRVSVTSNTRPVHATMNPLPKPYQSGNVEYYGDYA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1218 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 210 IPR036638 GO:0046983
Lan3g1218 237 Gene3D - 145 212 IPR036638 GO:0046983
Lan3g1218 237 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 2 215 IPR045843 GO:0003700|GO:0006355
Lan3g1218 237 SMART finulus 152 201 IPR011598 GO:0046983
Lan3g1218 237 Pfam Helix-loop-helix DNA-binding domain 155 195 IPR011598 GO:0046983
Lan3g1218 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Lan3g1218 237 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 2 215 - -
Lan3g1218 237 CDD bHLH_AtIND_like 147 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1218 Lan-Chr3 24386025 24387563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1218 112 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 86.869 1.48e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan3g1218 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1218 - - gmx:100815041 242.662