Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1216 ATGGCTGCATCCATAGCATCTTCCTTCTTTTCTTCATCCATCACCACTCTCAAATGCCTCCGTTCTAAGAACTTCTCCATAGACCCTCCTCTACTAACAACATCCACAAACCGAACCATGTTACCATCTTTGTCACTATCTTACATAGTAGAACCTTTGTCCATTGGTACCATGTCACAGAAGCTGTGGTTGCCTAGAATTTCTGCTGCTGTTGCAGAACAAGAACTGGTTGTGGATGCTGAAGAGAAGGTGGAGGAGAATGAAATGGGAGAGGAAGCAGTGGTAGCAGAAGAAGACACTGAAAACTCTATAAGCACTAAACTATATTTTGGGAATTTGCCTTATAGTGTGGATAGTGCACAACTTGCAGGGTTAATTCAGGACTATGGCAGCGCAGAACTAATTGAGGTTCTTTACGACAGGGGCACTGGAAAAAGCAGAGGCTTTGCATTTGTGACAATGACTTGTATTGAAGACTGTAATACAGTAATTGAAAATCTTGATGGAAAGGAGTTCATGGGCCGAACATTGCGGGTGAACTTCTCCGACAAACCGAAACCAAAACTACCGTTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCAGCAACTTCTGAGAGTCTGATACAAGCCTTCCAAGAATATGGAAATGTGGTTGGGGCTAGGGTTTTATATGATGGCGAAACTGGAAGGTCGCGAGGTTACGGCTTCGTTTGCTATTCAACAAGAGCAGAAATGGAATCTGCCCTTGCATCCTTGGATAATGTGGAACTAGAAGGACGGGCAATGCGTGTAAGCTTGGCTGAAGGAAAACGCTCACAGGGTTAA 843 0.4401 MAASIASSFFSSSITTLKCLRSKNFSIDPPLLTTSTNRTMLPSLSLSYIVEPLSIGTMSQKLWLPRISAAVAEQELVVDAEEKVEENEMGEEAVVAEEDTENSISTKLYFGNLPYSVDSAQLAGLIQDYGSAELIEVLYDRGTGKSRGFAFVTMTCIEDCNTVIENLDGKEFMGRTLRVNFSDKPKPKLPLYPETEHKLFVGNLSWSATSESLIQAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTRAEMESALASLDNVELEGRAMRVSLAEGKRSQG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1216 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lan3g1216 280 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lan3g1216 280 SMART rrm1_1 198 271 IPR000504 GO:0003723
Lan3g1216 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Lan3g1216 280 Gene3D - 68 186 IPR012677 -
Lan3g1216 280 SUPERFAMILY RNA-binding domain, RBD 99 189 IPR035979 GO:0003676
Lan3g1216 280 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 82 278 - -
Lan3g1216 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Lan3g1216 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Lan3g1216 280 PANTHER TRANSFORMER-2-RELATED 82 278 - -
Lan3g1216 280 SUPERFAMILY RNA-binding domain, RBD 190 277 IPR035979 GO:0003676
Lan3g1216 280 Gene3D - 187 280 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1216 Lan-Chr3 24351959 24354548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1216 102 276 Eukaryotic Initiation Factors Gene Family AT3G16380 33.854 2.29e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1216 - - lang:109326572 412.92