Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1205 ATGTCGCAACTTCAAGATTCTCCGAATACCGATTCTGAGAACCATACTGGTAACCCGATCATGACGACGTCGTTGTACGTTGGAGATCTTGATAAGAATGTCAGCGATTCTCAGCTCTATGATCTTTTCAACCAGATCGTTCAAGTTGTTTCTGTTCGTGTTTGTCGCGACTTGGCTACTGGTCAATCTCTCGGTTACGGTTATGTTAATTTCAGTAACCCTCAAGACGCGGCGAAAGCGTTGGATGAGCTGAATTTTACTCCGCTGAATAACAAACCGATTAGGATAATGTATTCTATTCGTGATCCTAGTGCTCGGAAGAGTAATACTGCTAACATATTTGTCAAGAATTTGGATAAGGTGATTGACCACAAAGCTTTACATGATACCTTTTCATCTTTTGGAAATATTCTTTCTTGCAAGATAGCTTCAGATGCTTCTGGCCAGTCTAAAGGCTATGGTTTTGTACAATTCGAGAATGAAGAATCTGCACAGAATGCAATTGATAAGTTAAACGGAAAGCTGATTAATGATAAACAGGTCCATGTAAGTCATTTCCTGCGAAAGGAGGACAGGGAGGGTGTATTCAGTAGCCGTAACTCAAAATTTACTAATTTGTATGTAAAAAACCTATCGGAGTCGCTAACAGAGGCTGAGTTGAAGAAAATTTTTGGCGAATATGGGACCATTACTAGTGCTATAGTGATGAGAAATGTAGATGGTAGTTCAAAGTGTTTTGGTTTTGTCAATTTTGAAAATCCAGATAATGCAGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGAAAAGCTATGAAAAAGTCTGAAAGAGAGCTCGAACTGAAGGAAAGTCTCGAGAGAAGTCTGAAGGAAGCTGCTGACAAATATCAGGATGCAAACTTGTATCTTAAGAACTTGGATGATAGTATTGGTGATGAAAAACTGAAGGAACTCTTCTCTGAGTTTGGCACAATAACTTCATACAAGGTTGTGCGAGATCCGCATGGAATTAGTAGAGGGTCTGGATTTGTTGCATTTTCTACACCTGAGGAAGCAAATCGAGCTCTTGGTGAGATGAACGGTAAAATGGTTGCTGGCAAACCTCTTTTTGTTGCCCTTGCGCAGAGGAAAGAAGAGAGAAGAGCAAAGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGTGATGGCTCCTCCTGTTGGACCTCATATGCCACTCTACCCTCCCAGGGGGCCTGCTGTTGGACCACATTTTTTGTATGGGCAACCACCTCCTGCCATCATTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCTGGAATGAGACCAGGTGGTGCTCCATTGCCAAACTTCTATTTTCCAATGGTTCAGCAGGGTCAACTTAGCCCACGCTCAGGTGGACGCCGAGGAGCAGGTCCTTTGCAACAACCCCAGCATCCAGTTCCAATGATGCACCAGCAGATACTTCCTAGAGGTCCTGTCTACCGGTACCCTTCTGGTCGCAACACTCGAGATGTTCCACGGCCAGGAGTATCTGGAGGAGTGCTTGCAGTCCCTTATGACAGTCTGCCCATCCGGGATGCCATGGGACAGCCTTTAGCCACTCAGGCCTTGGCCACAGCCCTTGCAAATGCTCCTCCTGAACAGCAAAGGACTATGCTTGGTGAAGCTTTGTACCCGCTAGTAGATAAGCTGGAACCTGATTCAGCAGCGAAGGTTACTGGTATGATTTTGGAAATGGACCAGCCTGAGGTATTACATCTGATTGAGTCACCAGATGCTCTCCAGGAAAAAGTTGCTGAGGCCATGAATGTGTTGAGGAGAAATGTTGCCCCTGAGGATCAACTGGCTTCGCTCTCTCTGAATTGA 1899 0.4439 MSQLQDSPNTDSENHTGNPIMTTSLYVGDLDKNVSDSQLYDLFNQIVQVVSVRVCRDLATGQSLGYGYVNFSNPQDAAKALDELNFTPLNNKPIRIMYSIRDPSARKSNTANIFVKNLDKVIDHKALHDTFSSFGNILSCKIASDASGQSKGYGFVQFENEESAQNAIDKLNGKLINDKQVHVSHFLRKEDREGVFSSRNSKFTNLYVKNLSESLTEAELKKIFGEYGTITSAIVMRNVDGSSKCFGFVNFENPDNAAKAVEALNGKKFDDKEWYVGKAMKKSERELELKESLERSLKEAADKYQDANLYLKNLDDSIGDEKLKELFSEFGTITSYKVVRDPHGISRGSGFVAFSTPEEANRALGEMNGKMVAGKPLFVALAQRKEERRAKLQAQFSQMRPVVMAPPVGPHMPLYPPRGPAVGPHFLYGQPPPAIIPQAGFGYQQQLVPGMRPGGAPLPNFYFPMVQQGQLSPRSGGRRGAGPLQQPQHPVPMMHQQILPRGPVYRYPSGRNTRDVPRPGVSGGVLAVPYDSLPIRDAMGQPLATQALATALANAPPEQQRTMLGEALYPLVDKLEPDSAAKVTGMILEMDQPEVLHLIESPDALQEKVAEAMNVLRRNVAPEDQLASLSLN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1205 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Lan3g1205 632 Pfam Poly-adenylate binding protein, unique domain 552 616 IPR002004 GO:0003723
Lan3g1205 632 Gene3D - 541 620 - -
Lan3g1205 632 SUPERFAMILY PABC (PABP) domain 489 626 IPR036053 GO:0003723
Lan3g1205 632 CDD RRM4_I_PABPs 307 384 - -
Lan3g1205 632 CDD RRM3_I_PABPs 203 282 - -
Lan3g1205 632 CDD RRM2_I_PABPs 111 185 IPR045305 -
Lan3g1205 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 24 617 IPR006515 GO:0003723
Lan3g1205 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Lan3g1205 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Lan3g1205 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Lan3g1205 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Lan3g1205 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Lan3g1205 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 544 621 IPR002004 GO:0003723
Lan3g1205 632 SUPERFAMILY RNA-binding domain, RBD 204 387 IPR035979 GO:0003676
Lan3g1205 632 MobiDBLite consensus disorder prediction 1 20 - -
Lan3g1205 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 204 219 IPR002343 GO:0003723|GO:1990904
Lan3g1205 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 294 311 IPR002343 GO:0003723|GO:1990904
Lan3g1205 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 312 327 IPR002343 GO:0003723|GO:1990904
Lan3g1205 632 PRINTS Paraneoplastic encephalomyelitis antigen family signature 327 339 IPR002343 GO:0003723|GO:1990904
Lan3g1205 632 PANTHER RNA BINDING PROTEIN 13 623 - -
Lan3g1205 632 SMART poly_2 556 619 IPR002004 GO:0003723
Lan3g1205 632 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Lan3g1205 632 SMART rrm2_1 112 184 IPR003954 GO:0003676
Lan3g1205 632 SMART rrm2_1 308 380 IPR003954 GO:0003676
Lan3g1205 632 SMART rrm2_1 205 277 IPR003954 GO:0003676
Lan3g1205 632 SMART rrm2_1 24 97 IPR003954 GO:0003676
Lan3g1205 632 CDD RRM1_I_PABPs 24 103 - -
Lan3g1205 632 Coils Coil 280 310 - -
Lan3g1205 632 Gene3D - 197 303 IPR012677 -
Lan3g1205 632 Gene3D - 106 196 IPR012677 -
Lan3g1205 632 SMART rrm1_1 308 380 IPR000504 GO:0003723
Lan3g1205 632 SMART rrm1_1 24 97 IPR000504 GO:0003723
Lan3g1205 632 SMART rrm1_1 112 184 IPR000504 GO:0003723
Lan3g1205 632 SMART rrm1_1 205 277 IPR000504 GO:0003723
Lan3g1205 632 Gene3D - 304 404 IPR012677 -
Lan3g1205 632 PANTHER POLYADENYLATE-BINDING PROTEIN 13 623 - -
Lan3g1205 632 Gene3D - 2 105 IPR012677 -
Lan3g1205 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Lan3g1205 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1205 Lan-Chr3 24291204 24295625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1205 22 631 Eukaryotic Initiation Factors Gene Family AT1G49760 65.342 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1205 K13126 - gmx:100784442 935.25