Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1180 ATGGCTATGGAAGCTCTGAAATCACCCACCACCGCTACCCCATCCTTCACTTTCCAGGAAGACAATACAAGCCACCATGAATCAGCGCCATGGGCTAAGAGAAAGCGTTCCAAGCGCAGCCGCATTGACCACTACCACCCTTCATGCACCGAGGAGGAATACCTAGCTTTCTGCCTCATCATGCTCGCTCGTGGCGGCACCACCACCACCACCACCACTACAACCACCGTCTCCGCCGACAAGACTCGAACCAATCCTACTCCATCAAACAAATCAGCAACAGTAGCCACAGCAACAGAACAGTCCAAGCTGAGTTACAAATGCTCCGTATGCAACAAAGCCTTCCCTTCTTACCAAGCACTCGGTGGACACAAGGCCAGTCACCGTAGACTCGCTGGCGGCAGCGGCGGTGATAATCAACCAACCTCCTCCGCCGTCACCAACAGTTCCGCCAACACCGTGTCCAGCAAAGGTGGCAACAAGACTCACGAGTGTTCCATTTGCCACAAGTCCTTCCCCACAGGACAAGCTTTAGGAGGACACAAGCGTTGCCACTATGACGGTGGTGCTGGCGGTGGTAGCAGCAGCGCTATCACCGCCTCTGAAGGAGTAGGGTCCACCCACACCGTGAGTCACAGCCACAAGCGTGATTTCGATCTCAACCTACCAGCTTTTCCAGACTTTGCAACCAAGTTCTTAGTGGAAGATGAAGTTTCAAGTCCTCTACCAATGAAGAAGCCTCGTCTTTTTGGCCATTCTCAGCTTTGA 768 0.5339 MAMEALKSPTTATPSFTFQEDNTSHHESAPWAKRKRSKRSRIDHYHPSCTEEEYLAFCLIMLARGGTTTTTTTTTTVSADKTRTNPTPSNKSATVATATEQSKLSYKCSVCNKAFPSYQALGGHKASHRRLAGGSGGDNQPTSSAVTNSSANTVSSKGGNKTHECSICHKSFPTGQALGGHKRCHYDGGAGGGSSSAITASEGVGSTHTVSHSHKRDFDLNLPAFPDFATKFLVEDEVSSPLPMKKPRLFGHSQL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1180 255 PANTHER ZINC FINGER PROTEIN ZAT10 1 250 - -
Lan3g1180 255 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Lan3g1180 255 SUPERFAMILY beta-beta-alpha zinc fingers 106 185 IPR036236 -
Lan3g1180 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 128 IPR013087 -
Lan3g1180 255 SMART c2h2final6 106 128 IPR013087 -
Lan3g1180 255 SMART c2h2final6 163 185 IPR013087 -
Lan3g1180 255 Gene3D Classic Zinc Finger 103 185 - -
Lan3g1180 255 MobiDBLite consensus disorder prediction 136 160 - -
Lan3g1180 255 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 250 IPR044653 GO:0003700
Lan3g1180 255 Pfam C2H2-type zinc finger 106 130 - -
Lan3g1180 255 Pfam C2H2-type zinc finger 163 187 - -
Lan3g1180 255 MobiDBLite consensus disorder prediction 1 41 - -
Lan3g1180 255 MobiDBLite consensus disorder prediction 69 92 - -
Lan3g1180 255 MobiDBLite consensus disorder prediction 8 25 - -
Lan3g1180 255 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Lan3g1180 255 MobiDBLite consensus disorder prediction 126 160 - -
Lan3g1180 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1180 Lan-Chr3 24030431 24047294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1180 1 249 C2H2 Transcription Factor Family AT1G27730 51.181 5.51e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1180 zf-C2H2_6 9.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1180 - - aip:107606374 296.589