Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1178 ATGGCACGAAGCTTAAGCGATTTAACCATCAACGACAATTCCTCTTCCGCTTTCAGCGATTGCAATAGCGACAGATCTGGCGAATTCCCCACACCTTCTTCTCAATCCCGACGCCTCTTCATCGCTTGCGCCGCCGATAATTCCGACCATTTCATTCCTCAACTCATCTCCGATCTCAATTCATCTTCCATCCATCACCAAAAACAAGCAGCTTTGGAAATCAGATTACTCGCCAAGAACAAACCAGAAAATCGCCTCAAAATCGCTAAAGCTGGCGCAATTAATCCACTAATCTCGCTCATATCTTCACCTGATCTTCAGCTTCAAGAATATGGAGTTACTGCGGTTCTTAATCTTTCTCTATGTGATGAGAACAAAGAGATTATTGCTTTATCGGGAGCGATTAAGCCTCTTGTTCGAGCTCTGAAATCGGGAACTTCAACCGCTAAAGAAAACTCCGCGTGTGCTTTGCTTCGGTTATCGCAGGTTGAAGAGAATAAACTTGCGATTGGAAAAGCGGGAGCGATTCCGTTACTGGTGAAACTTTTAGAAAACGGAAGTTTGCGCGGGAAGAAGGACGCGTCGACGGCGATTTACTCATTGTGTTCGGCGAAAGAGAATAAGGTGAGGGCAGTGAAAGCGGGGATTATGAAGGTTCTGGTGGAACTGATGGCGGATTTCGGATCGAACATGGTGGATAAATCGGCGTACGTGGTGAGCGTGTTAGTGACGGTGGCGGAGGGAAGGGCGGCGTTTGTGGAGGAAGGAGGGATTCCGGTGGTGGTGGAGATAGTGGAGGTGGGAACACAGAGACAGAAGGAAATAGCGGTGGTTATATTGGTTCAAATATGTGAAGAGAGTGTGGTGTACCGTAAGATGGTGGGTCGCGAAGGAGCGATTCCTCCTTTGGTTGCTTTGTCACAGTCCGGTACCAACCGCGCCAAGCAAAAGGCTGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCAACAATGTCTCTACCTGTACCTCATAA 1017 0.4779 MARSLSDLTINDNSSSAFSDCNSDRSGEFPTPSSQSRRLFIACAADNSDHFIPQLISDLNSSSIHHQKQAALEIRLLAKNKPENRLKIAKAGAINPLISLISSPDLQLQEYGVTAVLNLSLCDENKEIIALSGAIKPLVRALKSGTSTAKENSACALLRLSQVEENKLAIGKAGAIPLLVKLLENGSLRGKKDASTAIYSLCSAKENKVRAVKAGIMKVLVELMADFGSNMVDKSAYVVSVLVTVAEGRAAFVEEGGIPVVVEIVEVGTQRQKEIAVVILVQICEESVVYRKMVGREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSNNVSTCTS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1178 338 Pfam Armadillo/beta-catenin-like repeat 82 120 IPR000225 GO:0005515
Lan3g1178 338 Pfam Armadillo/beta-catenin-like repeat 165 203 IPR000225 GO:0005515
Lan3g1178 338 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 332 - -
Lan3g1178 338 PANTHER U BOX DOMAIN-CONTAINING 1 332 - -
Lan3g1178 338 Gene3D - 33 337 IPR011989 -
Lan3g1178 338 SMART arm_5 287 327 IPR000225 GO:0005515
Lan3g1178 338 SMART arm_5 245 285 IPR000225 GO:0005515
Lan3g1178 338 SMART arm_5 81 121 IPR000225 GO:0005515
Lan3g1178 338 SMART arm_5 204 244 IPR000225 GO:0005515
Lan3g1178 338 SMART arm_5 163 203 IPR000225 GO:0005515
Lan3g1178 338 SMART arm_5 122 162 IPR000225 GO:0005515
Lan3g1178 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Lan3g1178 338 SUPERFAMILY ARM repeat 48 325 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1178 Lan-Chr3 24016069 24030391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1178 3 332 U-box Gene Family AT2G23140 45.373 1.33e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1178 - - gmx:100797550 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1178 3 24016069 24030391 Lan3g1178 3 24016069 24030391 PCT