Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1167 ATGGATTCAGATAAAGCGAAGCTGTTCGTAGGGGGCATTTCGCGAGAAACCACTGATGATATTCTTAGAAATCATTTCGCTCGGTACGGAAACGTTTTAGATTCCACGATTTCAGTAGACCGCATCACTCGAAACCCTAGAGGTTTTGGCTTTGTTACATTCTCTGATCTATCTGCAGCTGTAAAAGCTCTTCAAGACACCCATGTTGTTCTTGGAAGAACGGTAGAAGTGAAAAGAGCAATACCGAGAAGTGAACAACAACACCAAAACCAAATGCAGAATAGAGTTGCGAGTAATTATTGTAGTAATGAGTGTAGTGGTGACCAGATTAGGACGAAAAAGATATTTGTAGGAGGTTTATCATCCAGTATATCCGAGGAAGAGTTTAGGAGATATTTTGAGAGGTTTGGTCGGATAACCGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTCGGGGATTTGGGTTCATCACTTTCGATTCAGAAAAATCCGTTGAAAATGCTGTGGTGCAAAGTTTTCATGACTTGAATGGTAGGCAGGTTGAGGTGAAGAGGGCTGTACCAAAAGAGGGGAACTATGGCGGTGATGGTTTTAGCAAGTCAAGACATAATAAGATTGAAAGAGGACCATCTCAAATTTATCCTCCTTATAGTCCAAGGTACATGTTCCCCGGCTCTGCACCTTTGTCCTATTATAGCAGTGGTGGGGTTTATGCCTATGGATCAAACCCCTATGGTTATTGCTACACTATGGGTGGGTATGGGGTGAATGGATTTGCAGTTCCATCTGATGCTTCTAGAAACTTCTGGTATGGTCCCATGGTAACCGGTCCTCAGGCATGTCAGATGCCATATGTCAATGCCTCTCCCAATGTTGCCTACACGGGTGGTAGGGTTCAAATAGTAGGTAGTTGTTTTGGAACCAGGGGGTACAATGGCGTTCTTGGGCCTGCAACAAATTTGAAATCTGATCAATGTTATACTGCCAATGGATTTATTCCACACTACGTGACACCACCTCACAGCTAG 1035 0.4386 MDSDKAKLFVGGISRETTDDILRNHFARYGNVLDSTISVDRITRNPRGFGFVTFSDLSAAVKALQDTHVVLGRTVEVKRAIPRSEQQHQNQMQNRVASNYCSNECSGDQIRTKKIFVGGLSSSISEEEFRRYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEKSVENAVVQSFHDLNGRQVEVKRAVPKEGNYGGDGFSKSRHNKIERGPSQIYPPYSPRYMFPGSAPLSYYSSGGVYAYGSNPYGYCYTMGGYGVNGFAVPSDASRNFWYGPMVTGPQACQMPYVNASPNVAYTGGRVQIVGSCFGTRGYNGVLGPATNLKSDQCYTANGFIPHYVTPPHS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1167 344 Gene3D - 86 205 IPR012677 -
Lan3g1167 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan3g1167 344 Gene3D - 4 85 IPR012677 -
Lan3g1167 344 SMART rrm1_1 114 186 IPR000504 GO:0003723
Lan3g1167 344 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan3g1167 344 SUPERFAMILY RNA-binding domain, RBD 110 206 IPR035979 GO:0003676
Lan3g1167 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lan3g1167 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 172 IPR000504 GO:0003723
Lan3g1167 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Lan3g1167 344 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 330 - -
Lan3g1167 344 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 330 - -
Lan3g1167 344 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1167 Lan-Chr3 23930867 23932489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1167 8 230 Eukaryotic Initiation Factors Gene Family AT4G34110 27.731 1.37e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1167 K14411 - gmx:100816822 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1123 15 20032286 20033890 Lan3g1167 3 23930867 23932489 LSH
Lan14g0868 14 15345783 15347472 Lan3g1167 3 23930867 23932489 LSH