Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1160 ATGTCTTCTAATCATATCTCTAACCCAGAACTTAGACTTGGTCTTGGCCTAAGCCTTCATGATCAGTTTTCAGAGACTTGTGTTAAGAAGGGTGAATACAGACAGAAGAAAAAGGAGAATGATCCAACAAAATGTAATAAGGCATACCCATCTCTAACATTAGGACCACCTAAGGATGATGAAGCAAATAATCAAATAGCTACAAAGACTGAATCAGATGAATATTTTCTTCCACGGGCCTCTTCTCCAAGTGCAGTATCTTCATTTTCAAACTCTTCTAGCATCATCAAGAGGGAGAGAGACCAGTTCGAGGTTGAAGAATTTGAGCAAGAAAAAGAGAGGAATCAATCAAGGGATGTTGCTGTTGATGAAGAAAATGGTAATCCCAGGAAGAAACTCAGGCTCAACAAAGAACAATCGGAAGTCTTAGAAGATAGTTTCAAAGAACATTCTACTCTCAATCCGATCCAAAAGCAAAAACTAGCAAGGAAGCTGAATCTGCGGGCTAGACAAGTTGAGGTTTGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACCGAAGTGGACCTAGAGTTACTGAAACAGTGCTGTGAAAATCTAACAGAGGAAAACAAGAGGCTGCAAAAGGAGTTGCAAGATCTTAAGTCAATGAAAACGACACCGTATATTACAATTTGTCCCTCTTGTGAGCGAATTTGTGGCGGAAATGGTAGCAGCAATAATGGCTCTTCTCCAACGATGCTCCGAAAGAGTCATAATCACTTATGCAAAAGCAATTATTCATTCACTCAATCATCCGCAGCTTGCTAG 816 0.4007 MSSNHISNPELRLGLGLSLHDQFSETCVKKGEYRQKKKENDPTKCNKAYPSLTLGPPKDDEANNQIATKTESDEYFLPRASSPSAVSSFSNSSSIIKRERDQFEVEEFEQEKERNQSRDVAVDEENGNPRKKLRLNKEQSEVLEDSFKEHSTLNPIQKQKLARKLNLRARQVEVWFQNRRARTKLKQTEVDLELLKQCCENLTEENKRLQKELQDLKSMKTTPYITICPSCERICGGNGSSNNGSSPTMLRKSHNHLCKSNYSFTQSSAAC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1160 271 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Lan3g1160 271 Coils Coil 185 222 - -
Lan3g1160 271 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 270 - -
Lan3g1160 271 MobiDBLite consensus disorder prediction 97 133 - -
Lan3g1160 271 Gene3D - 122 191 - -
Lan3g1160 271 MobiDBLite consensus disorder prediction 68 96 - -
Lan3g1160 271 SUPERFAMILY Homeodomain-like 127 194 IPR009057 -
Lan3g1160 271 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Lan3g1160 271 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Lan3g1160 271 MobiDBLite consensus disorder prediction 31 133 - -
Lan3g1160 271 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Lan3g1160 271 CDD homeodomain 129 187 IPR001356 GO:0003677
Lan3g1160 271 PANTHER - 3 270 - -
Lan3g1160 271 SMART HOX_1 128 190 IPR001356 GO:0003677
Lan3g1160 271 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1160 Lan-Chr3 23858575 23860217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1160 1 234 Homeobox Transcription Factor Family AT2G22800 47.541 4.08e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan3g1160 Homeodomain 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1160 K09338 - gmx:100790927 275.789