Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1159 ATGGAGGAATACACTAACAACAATAATCATATAAGAGAAAACACAGGTCAAGTTCCAAGGGAAAATTTCTTATACACCACTGCAGTTGGTGATTCAAGCGGTGGAAACCATCATCATCATAATCAATTTCCTATCAACACTTTTCATCTTCAATCGGGTGGATCGGGTCACAGTTTTCAACCCGATCAGGTACGATATGACTCTAATGTGAAAACTGAATCCAACAACAACACCTCGCAGCAGCTACAAACTCCGATTTTCCACTATCCCTTATTGAGAGGAAGTATTCTACAACCTCATCAAACTCAACATGGAGGGAGCCATAGCTCTAACGAAGTTGAAGAAGATATAAAAGCCAAAATCATTGCTCATCCTCAGTACTCTAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTATGGCTGCAGCTCAACAAGATTTTGAGGCACGACAACGATCTTCAGTTAGGTCTAATCTGGAAGGTTCCAAGGACCCTGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATAGAGATGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCAGAAGATAGAAACTCAGCTCAATACGCTTTGCAATGGCAATGGACCCCTTAGGATCTTCTCTGATGATAAATGTGAAGGCGTTGGTTCATCTGAAGAGGAACAAGACAATAGCGATGGAGAAACAGAACTTTCCGTGATTGATCCCCAAACAGAAGATCGTGAACTCAAAAACCATTTACTCAGGAAGTACAGTGGTTACTTAAGTAGCCTCAAGCAAGAACTTTCAAAGAAAAAGAAAAAAGGAAAACTGCCTAAAGATGCAAGACAGAAGCTACTTAGTTGGTGGGAATTACATTACAAATGGCCATACCCTTCGGAATCAGAGAAGGTGACATTAGCTGAATCAACTGGATTGGACCAGAAACAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCATTGGAAACCTTCTGAAGACATGCAATTTATGGTCATGGATGGCCTTCATCCGCATAACGCAGCTGTTTTCATGGCTGATGGACATTACCGTTTAGGGCCATAA 1125 0.4133 MEEYTNNNNHIRENTGQVPRENFLYTTAVGDSSGGNHHHHNQFPINTFHLQSGGSGHSFQPDQVRYDSNVKTESNNNTSQQLQTPIFHYPLLRGSILQPHQTQHGGSHSSNEVEEDIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVVARMAAAQQDFEARQRSSVRSNLEGSKDPELDQFMEAYYDMLVKYRDELTRPIQEAMDFMQKIETQLNTLCNGNGPLRIFSDDKCEGVGSSEEEQDNSDGETELSVIDPQTEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVTLAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNAAVFMADGHYRLGP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1159 374 SMART ELK_2 261 282 IPR005539 GO:0003677
Lan3g1159 374 MobiDBLite consensus disorder prediction 1 20 - -
Lan3g1159 374 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Lan3g1159 374 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Lan3g1159 374 MobiDBLite consensus disorder prediction 228 258 - -
Lan3g1159 374 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Lan3g1159 374 Pfam KNOX2 domain 172 217 IPR005541 GO:0003677|GO:0005634
Lan3g1159 374 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Lan3g1159 374 Gene3D - 286 348 - -
Lan3g1159 374 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Lan3g1159 374 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 367 - -
Lan3g1159 374 SUPERFAMILY Homeodomain-like 282 357 IPR009057 -
Lan3g1159 374 Pfam ELK domain 261 282 IPR005539 GO:0003677
Lan3g1159 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 367 - -
Lan3g1159 374 Pfam KNOX1 domain 117 157 IPR005540 GO:0003677|GO:0005634
Lan3g1159 374 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Lan3g1159 374 CDD homeodomain 293 345 IPR001356 GO:0003677
Lan3g1159 374 SMART HOX_1 283 348 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1159 Lan-Chr3 23843413 23849044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1159 75 374 Homeobox Transcription Factor Family AT4G08150 68.153 2.78e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan3g1159 KNOX2 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1159 - - gmx:100807602 548.51