Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1153 ATGGAGACTGTTATTATGTACAATGCTCCAATGAACATTTATGTCAGAGATTCTTCTGTAATAGATGAAATATCACAACATTCCACCTCAAATCCACTCATTCAATCCTATTCATTTGTTGATCTTAATAACCAAACTCATATCATAAATGGAATTTCAATCCTTGCTGGAGAACATGGTGAACAACCTATAAGTAATATCATTTCTGATGTTCCCTTCATAAATCATGCAAGTATTGCTAACTCTAGTTCATTAGTCACATCACAAGGAAAGAATGTTGTCGGAGATTCCTCGAATCGGATAAACAACACTGAGTATCAAGAGCATTTAGCTGCAGGAATGCATATCACTCCTGTTTCACTTGCTGCTAGAATTGATCTTGATGAAAGTTTAGATAATTCAACAGTTTTGCCTCCTTCAATGGGGGCATTGGAGCCATATGTCTTCAATAATTGGCAAGCTACTTCAGACCCTTTGTCTGAAACTTTCCAGAATCACGTTTACGAGAAAGTACCGCATCGTGGTTATGATGAAGTAACGGGTGGTAATATGTGGAACAATGTCAACAAGTTTCCTAAAGCAACAGAGATTGTTGAAACTGTGTGCCAGCCTTATTCATCCATAGGAAACATGGATCCAAATGGATGGACATCAAATATTTCTAACTTGACCAATCATGCTTACAACTCCTCTAACTTTAGTAACGAACTCTCCTTAAGTCTCACAACATCACGAACCGCAGGACAGTGCTCCGAGGCCAGTTTCCCTGATGTCAGCAGCAATAGAGAACTTGCTATGGGTTCTACGAAATATGTGCAGTTTTCACCGTTAGTATTGGGATCAAGATATCTTGTTGGAATCCAACAGATACTTGCTCAAATTGCGAGATATTCATTTGAAGATGTAGAACAGATGAATGGTTCAAGCTCGGCTTTCCCAACCATGAGAAGTGTGTTGGTAAATGACAAGGAAAATTCGAAGTTTGAAGAACCTCATGCAGAATCTCCTTTGCAACGGCATGCGGCTGAATCAAAGAAATCCCAACTGCTGGTACTTCTACAGCTGGTTGATGATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTGTCCGCATTCCATGCTGCTACAGAACTAGACCCTCAAATACATGCTCATTTTGCTCTTCGAATGATCTCTATCCTATACAAGGAGATGCAAGAAAGGATTAGCAGTCATATACTCGGGATGGGATCAGATTTTAACAAGTCTTGCTCAGACGAGAATAATGACCGGTGTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAAATCATCAGTTATGGAGACCCCAAAGAGGGTTGCCAGAAAGATCTGTCTCAGTTCTAAGGGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTGTCAAGAAGCCAGGTATCTAATTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCCATGATTGACGAGATGTACGCCGAAATGAGTCAAAGAAAGGCTTGTCGAAATGAACAAGGAATGGAGAGCAGCCATGGCAACAGGAGAATAAGCATGACCCATCTGAATTGA 1641 0.4016 METVIMYNAPMNIYVRDSSVIDEISQHSTSNPLIQSYSFVDLNNQTHIINGISILAGEHGEQPISNIISDVPFINHASIANSSSLVTSQGKNVVGDSSNRINNTEYQEHLAAGMHITPVSLAARIDLDESLDNSTVLPPSMGALEPYVFNNWQATSDPLSETFQNHVYEKVPHRGYDEVTGGNMWNNVNKFPKATEIVETVCQPYSSIGNMDPNGWTSNISNLTNHAYNSSNFSNELSLSLTTSRTAGQCSEASFPDVSSNRELAMGSTKYVQFSPLVLGSRYLVGIQQILAQIARYSFEDVEQMNGSSSAFPTMRSVLVNDKENSKFEEPHAESPLQRHAAESKKSQLLVLLQLVDDRYSQCLDEIHTVVSAFHAATELDPQIHAHFALRMISILYKEMQERISSHILGMGSDFNKSCSDENNDRCVETSFIQKQWALQQLKRKNHQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAVKSGLSRSQVSNWFINARVRLWKPMIDEMYAEMSQRKACRNEQGMESSHGNRRISMTHLN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1153 546 Pfam Associated with HOX 278 405 IPR006563 -
Lan3g1153 546 ProSiteProfiles 'Homeobox' domain profile. 447 510 IPR001356 GO:0003677
Lan3g1153 546 CDD homeodomain 450 511 IPR001356 GO:0003677
Lan3g1153 546 MobiDBLite consensus disorder prediction 527 546 - -
Lan3g1153 546 Pfam Homeobox KN domain 467 506 IPR008422 GO:0003677|GO:0006355
Lan3g1153 546 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 540 - -
Lan3g1153 546 Gene3D - 445 525 - -
Lan3g1153 546 SUPERFAMILY Homeodomain-like 452 519 IPR009057 -
Lan3g1153 546 SMART HOX_1 450 514 IPR001356 GO:0003677
Lan3g1153 546 SMART prehox3 272 406 IPR006563 -
Lan3g1153 546 PANTHER HOMEOBOX PROTEIN ATH1 12 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1153 Lan-Chr3 23810195 23813597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1153 235 523 Homeobox Transcription Factor Family AT4G32980 55.263 4.09e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan3g1153 POX 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1153 - - lang:109343832 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1153 3 23810195 23813597 Lan3g1153 3 23810195 23813597 ECH
Lan14g0863 14 15296300 15299599 Lan3g1153 3 23810195 23813597 LSH
Lan3g1153 3 23810195 23813597 Lan14g0863 14 15296300 15299599 PCT
Lan3g1153 3 23810195 23813597 Lan3g1153 3 23810195 23813597 PCT
Lan14g0863 14 15296300 15299599 Lan3g1153 3 23810195 23813597 PCT