Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1138 ATGGCATCATCTTCCGATCTAGGTGAAATCATCAATGCACCTGCACCTGAACGGAAGGAACAGAGAATTATACTGAAAACCAAATCTGAGGTGGATGTGCTTGATGATGGGTACAAATGGCGAAAGTATGGGAAGAAAATGGTCAAAAGCAGCCCCTTTCCAAGGAACTACTATAAGTGTTCTGCATATGGGTGCCCAGTGAAGAAAAGAGTTGAAAGAGACAGAGATGATCCAACGTATGTGATAACAACCTATGATGGCATTCATACTCATCCAGTTCCTACCTAA 288 0.4236 MASSSDLGEIINAPAPERKEQRIILKTKSEVDVLDDGYKWRKYGKKMVKSSPFPRNYYKCSAYGCPVKKRVERDRDDPTYVITTYDGIHTHPVPT* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1138 95 Gene3D WRKY domain 19 95 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan3g1138 95 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 92 IPR044810 GO:0003700
Lan3g1138 95 Pfam WRKY DNA -binding domain 35 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan3g1138 95 SMART WRKY_cls 34 93 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan3g1138 95 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 15 92 - -
Lan3g1138 95 ProSiteProfiles WRKY domain profile. 29 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan3g1138 95 SUPERFAMILY WRKY DNA-binding domain 27 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1138 Lan-Chr3 23697736 23702575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1138 22 91 WRKY Transcription Factor Family AT5G26170 78.571 2.16e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan3g1138 WRKY 9.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1138 3 23697736 23702575 Lan3g1138 3 23697736 23702575 ECH
Lan15g1100 15 19898536 19899710 Lan3g1138 3 23697736 23702575 LSH