Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1135 ATGGAAGGAAGCGTTGTCTACAATCATCGCACGGTGGAGGAAGTTTTCTCCGATTTCAAAGGCCGCAGAACTTCCATCATCAACGCCCTCACCACCGATGTTCAACACTTCTTTCAACAATGTGATCCTGACAAAGAAAATCTTTGCCTTTATGGATTTCCTACTGAACACTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGTTTTGGGTATTAACTTTGCAAGAGATGGGATGCAACAAAAGGACTGGCTTACCTTGGTTGCTGTCCATAGTGATGCATGGTTACTTTCTGTAGCATTTTATTTCGGTGCCAAGTTTGGATTTGATAAGGCTGATAGGAAACGACTGTTTACTATGATAAATGATCTTCCAACTATATCTGAGGTTGTCTCAGGATTGGCCAAGAAACAGGGAAAGGAAAAGTCATCAGTCTCTAATCATAGCAGTAACAAACCTAAATCAAACTCTAAGGGAGGTTCTGAACCTCAAGCTAAGAATTCCAGAGCAGTGCAATTAAAAGATGAGGATGAGAATGGTTTTGAAGAGGAAGATGAGGAGGACCATGGAGAGACTCAATGTGGGGCATGTGGAGAGAACTATATAACTGGGCAGTTCTGGATCTGTTGTGATGTCTGCGGGAGGTGGTTCCATGGAAAGTGTGTCAAAATTACCCAGGCAAGGGCTGATCATATCAAAATCTACAAATGTCCGTCTTGCAGCCACAAGAGATCTCGACCTTTACCGTGA 768 0.4401 MEGSVVYNHRTVEEVFSDFKGRRTSIINALTTDVQHFFQQCDPDKENLCLYGFPTEHWEVNLPAEEVPPELPEPVLGINFARDGMQQKDWLTLVAVHSDAWLLSVAFYFGAKFGFDKADRKRLFTMINDLPTISEVVSGLAKKQGKEKSSVSNHSSNKPKSNSKGGSEPQAKNSRAVQLKDEDENGFEEEDEEDHGETQCGACGENYITGQFWICCDVCGRWFHGKCVKITQARADHIKIYKCPSCSHKRSRPLP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1135 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 253 IPR013083 -
Lan3g1135 255 MobiDBLite consensus disorder prediction 144 198 - -
Lan3g1135 255 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lan3g1135 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 253 - -
Lan3g1135 255 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
Lan3g1135 255 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Lan3g1135 255 CDD PHD_AL_plant 199 249 IPR044104 -
Lan3g1135 255 MobiDBLite consensus disorder prediction 150 174 - -
Lan3g1135 255 PANTHER CPG BINDING PROTEIN 3 253 IPR045104 GO:0006355|GO:0042393
Lan3g1135 255 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Lan3g1135 255 SMART PHD_3 199 247 IPR001965 -
Lan3g1135 255 Pfam PHD-finger 200 248 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1135 Lan-Chr3 23681461 23686795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1135 3 252 Alfin-like Transcription Factor Family AT3G42790 68.800 8.00e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan3g1135 Alfin 3.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1135 - - pop:7476667 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1135 3 23681461 23686795 Lan3g1135 3 23681461 23686795 ECH
Lan14g0848 14 15182620 15186424 Lan3g1135 3 23681461 23686795 LSH