Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1127 ATGGGTTCTTCAGAGATTGATCAAAACGATTCTCAATCTATTTCTTCCAACAATCCCAACCCCATTGACCCTAGAAGTTATCAATTGGAGGTGTTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTGTTGGATACAGGTTCTGGTAAAACTTTGGTAGCTGTGATGCTCATAAAAGAAGCTCATAAAGCTATCAACTCTAGTCACATTAAAAAGTTGATTATTTTCTTAGCTCCCACTGTTAATCTTGTGAACCAGCAATTTAAACATATAAAAGATCTTACAGGTTTTAAAGTTGAGGAGTACTATGGGGCTAAAGGAGTTGATACATGGGATTTAAAAATCTGGGAGAAGGAGATTAGTGAAAATGATGTACTGGTTATGACGCCCCAAATTCTTTTGGATGCTTTAAGAAAGGCATTCTTAAGTATAGAAATGATATGCTTGATGATTATTGATGAATGTCACCGAGCAACTGGCAAACATCCCTATTCAAAAATAATGGAAGAGTTCTATCACAAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTAGGTAAAAAAGTCGGTGTTTCCTCTACCAAGGGTTGCGAGGGTCAAATATCAGAACTTGAATACATCTTGGATTCTCAGAGATATACTGTTGAAGATAGGAAAGAAATAGATATACATATCCCTTCTGCAAAAGAGAGTTGTAGATATTATGACCAAGCACAATACCCTGTGTTGAGGTTGAAGTCAAAGATTGAAGCCTTGTTCGAGTTCAATGCATTGTTCTCAGAATTGCAAAGTTTGACGCTACGTGAGGATGTGGATTATAAATTTAAGAAACTGCATAATGGCATGTTCAATAAACTCGAAAAAATCTTATATTGCCTTGAAGATCTTGGACCCATATGTGCTTATGAGGCTGCTAAAATGTATCACGAAAATTTCTCCAAAATTATAGGAGGCTGTGAAGTTTACAGAAAAGCTTCTCTCAATTGTAAACTTTTCATGGAAAAAGTAATGCAATTAATTGAAGAATCCCTCCATCTCGATGACAGAAAGAATTCGGAGGTTGAATTTGATTATTCAAAGGCAGTAGAGTTGAGACACATATCTCCAAAATTACTCGAACTTATTAAAATCTTCCAGTCGCTTGGAGAATCTAGCAAGATGTCATGTCTCATTTTTGTCGAAAGAAAACTTACAGCTAAGTTAATGGAAAAATTTCTAAAGAAAGTATCCCAGATATCTCATTTCACAGTATCCTATATAACTGGAGGCAATACTGCAGTCGATGCGCTGACTCCTAAAAAGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAGGGGTCAATCTATTAATTACTACTGATGTAGCTGAGGAAGGAATTGATGTGCCAAACTGCTCTTGTGTGATACGTTTTGACCTACCCAAGACAGTTCGTAGTTATGTCCAATCTCGGGGAAGATGTCGGCAGCCTAACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACTTTTTGACATCATCAGGAGTGAGCGCTCCATGACTAATGCAGCTACTAATAAAGACCACAATGCTTCTAATTTAAGGGTGTTTACTGTAGGGAAAACAAATGCATACCATGTGAATTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTGGACTTATAAATCGATACTGCGAAAAGCTACCACATGATAAGTACTCCCGTGTGAAGCCTACTTTTGAGTTTCAGCCTATGGGAGGGGGTTACACATGTAAGTTAACATTGCCGCCTAATGCAGCTTTCCAAGTAATAGTTGGTCCCTCAGGAAAGGATGTTCATTTGGCAAGGCATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGATCATCTTGTCCCTCTCATTAAAGAAGAGCCTTCAGAAGCTGATCTTATTGTGAAAAACAAAGAATCGAGTTCAGGTGCAGGAAGAGGAACCACAAAAAGAAAGGAGTTACATGGCACAACCAGCATTCGTGCATTATGTGGTACATGGGGAGACAAACTTGATGGCACGAAATTTCATGCCTATAAGTTTGATTTCACATGTAATATCGTCAGTGAAATTTACTCTGGCTTTGTTCTTCTGGTTGAGTCAAAGCTTGATGATGATGTTGGAAATATGGAGGTAGATCTTTATTTAATCTCAAAGATGGTGAAGGCTTCTGTCTCTTCATGTGGGCAAGTTGACCTGGATGCTGAACAGATGATGAATGCTAAATGCTTCCAAGAGCTTTTTTTCAATGGTTTGTTTGGGAGGTTGGTGCTTCGGTCTAAATCAGCAGCAAGGGGAGGAAGGGAGTTTTTACTTCAAAAAGACACAAATACATTATGGAACCCAACATACTTGTATTTGCTTCTACCACTTGAGAAACTGGATGATTCATGTATGCGATCATTGACAATAAATTGGTCTGGAATCAAATCTTGTGCTTCTGCTATTGAGTTTTTGAGGAAGAAGTTTTTGTTGGTTGCTGGGAATTGTTGTAAGGATAGTGATGACACAAAAATCACGTCACCTTGTCATACCAGTCCAATGGAGGTGGAAAGTCAAGATAAAAATAGCATTTACTTTGCTAATTGCATGCTTGATGTTAATATTCTCAAAGATGTGGTTGTTTTGGCCATTCACACCGGCAGAATCTATTGTATTGTGGAATTAGATATCAACCTATCCGCTGAAAGTCCCTTCGATGGCAACGATGAAAAGTCTGGGGGTGAACCGATAACATTCTCAGGTTACTACAAAAAAAGGTATGGCATTACGCTGAGGCATCCAGGGCAACATTTGTTACGTTTGAAGCAAAGTCATAATGCGCACAATCTTCTTTTGAACTTCCACGAGGAAGATGGTCGGGACAAGACATCACAAACTGGCCTGGCACAATCGAAGATGCCTGCCCATGTTTACATTCCACCTGAGCTTCTCTATGTTCTTGATGTTAAAAGAGACGTTTTGAGGTCAATGTACTTGCTACCATCACTGATGCATAATCTTCAATCGTTCATGTTATCCAGTCAGCTTAGAGAAGAGATAGGTGGCCAAACTAACAATTTCAACATTCCTAGCCCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTGCTGAAAAATGTTCAATGGAACGTCTTGAGTTACTTGGAGATTCTGTTCTGAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGGCATGCGATCACTGGCTGTTTGTAATTCAACCCTACATAAACGGGCAACAGATCACAAATTGCAGGTTACTTTTACTGTGCTTGTTATTATTTATCTACAGTCAAGAAACTATTCATTAATATTATCTGTTGTCTATTATATGGATGTATCAGTATCAACATTGGAAAGCATGTTCGAATTCAGCAGGTGGGGGGGGTACTATGTGGCTGGTGGATTAATTGCTGCACTTCACGTGATGAAGTGGCTTGGGATTGATGCTGAACTTGAACCTTCTTTGGTTGATAAAGCCATAACTGCTGCGTCTCTCCATGCATATGTGCCAAAAGTTAAAGAGATTGGAAGCCTTGAAATGAAAATTGGTTATGAATTTTCCATCAAGGGACTCTTACTGGAGGCAATGACACATGTATCCGGGAAAGAAGTTGGGATTGACTGCTGTTATGAGAGGCTTGAATTTCTCGGTGACTCAGTACTGGACCTTCTTATCACACGCCATCTTTATCAGAGCCACACAGATATTGATCCAGGAGAATTGACTGACTTGCGTTCCGCTTCTGTCAGTAACGAAAATTTTGCTCAAGTTGCTATAAGAAGAAACCTTCACCTGCACCTTTTGCATGGCTCAGAATTATTGCGGAGCCAGATTGCAGATTATGTAAAGGTCATTTCTGAATCAGAGGACAATACTAGATCATTCCAAGGCATTAGAGCTCCCAAGCCACTTGGAGATCTAGTCGAAAGTATTGCTGGGGCTATGCTAATTGATACCAAGCTCAATATTGATCAAGTGTGGAAAGTTTTCAACCCTTTGCTATCTCCAATTGTTACTCCTGATAAACTTGAACTGCCTCCGTGGCGTGAATTAAATGAATTATGTGACTCTCTTCGGTGTTTTGTGAAAGAAAGTTGTGTAAAGAAAGGAACCATGGTGCATGCCACGCTTAGTGTGCAGTTGCATAATACCTTGTTGGTTCGGGAGGGAAAGGGGCAAAATGCAAAAACTGCGAAAGGAGATGCTGCTCTTCATTTGTTGAAGGACCTTGAGAAGAGAGGAATTTCATATAGCAGTAGCATGTCAAAGAGAAAACGAGATGCTTCTGGTCTTACTGATGAAAACTCCTTGAAGCCAGTAGCACAGTTAGAATATAAAAGGCACAAAGTGGATGAAACTAACTTAACTGCAAATGCACGAACTGGTTTGCTGCCTCTCAAAGACACTTCCATGGAAGCCTCTAACCTCGGTGCTTCTGTTCCAGTTATTGGCTCAATTAATATGAAGAAGGGAGGACCTCGAAGCGCACTATATGAACTGTGCAAGAGACTACAGTGGCCATTGCCTGAATTTGATTCAACAGAATATAAGGATAGATCTCTATTCCAAGGGTGTGAAGGGCTGGAAGGAAGCAAGGGACAAAACTGTTTTGTGTCGAAAATTAGCTTATGCATACCCAATGGTACTGCTCTAGAATGCGAAGGAGAGGCTAGACCCGATAAGAAGACCTCACATGACTCTGCTGCACTTCAAATGCTTTATGAGCTACATCGGCTGGGAAAACTTAAGATAACTGATTACCCTACCCTTTCTGTTTCTTCGAAGTAA 4893 0.3973 MGSSEIDQNDSQSISSNNPNPIDPRSYQLEVFEVAKKRNTIAVLDTGSGKTLVAVMLIKEAHKAINSSHIKKLIIFLAPTVNLVNQQFKHIKDLTGFKVEEYYGAKGVDTWDLKIWEKEISENDVLVMTPQILLDALRKAFLSIEMICLMIIDECHRATGKHPYSKIMEEFYHKANEKPKIFGMTASPVGKKVGVSSTKGCEGQISELEYILDSQRYTVEDRKEIDIHIPSAKESCRYYDQAQYPVLRLKSKIEALFEFNALFSELQSLTLREDVDYKFKKLHNGMFNKLEKILYCLEDLGPICAYEAAKMYHENFSKIIGGCEVYRKASLNCKLFMEKVMQLIEESLHLDDRKNSEVEFDYSKAVELRHISPKLLELIKIFQSLGESSKMSCLIFVERKLTAKLMEKFLKKVSQISHFTVSYITGGNTAVDALTPKKQKEILDSFRSGGVNLLITTDVAEEGIDVPNCSCVIRFDLPKTVRSYVQSRGRCRQPNSQFIVMLERGNLKQRNQLFDIIRSERSMTNAATNKDHNASNLRVFTVGKTNAYHVNSTGASVTLDSSVGLINRYCEKLPHDKYSRVKPTFEFQPMGGGYTCKLTLPPNAAFQVIVGPSGKDVHLARHLVCLEACKKLHQMGALNDHLVPLIKEEPSEADLIVKNKESSSGAGRGTTKRKELHGTTSIRALCGTWGDKLDGTKFHAYKFDFTCNIVSEIYSGFVLLVESKLDDDVGNMEVDLYLISKMVKASVSSCGQVDLDAEQMMNAKCFQELFFNGLFGRLVLRSKSAARGGREFLLQKDTNTLWNPTYLYLLLPLEKLDDSCMRSLTINWSGIKSCASAIEFLRKKFLLVAGNCCKDSDDTKITSPCHTSPMEVESQDKNSIYFANCMLDVNILKDVVVLAIHTGRIYCIVELDINLSAESPFDGNDEKSGGEPITFSGYYKKRYGITLRHPGQHLLRLKQSHNAHNLLLNFHEEDGRDKTSQTGLAQSKMPAHVYIPPELLYVLDVKRDVLRSMYLLPSLMHNLQSFMLSSQLREEIGGQTNNFNIPSPLILEALTTLRCAEKCSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSGMRSLAVCNSTLHKRATDHKLQVTFTVLVIIYLQSRNYSLILSVVYYMDVSVSTLESMFEFSRWGGYYVAGGLIAALHVMKWLGIDAELEPSLVDKAITAASLHAYVPKVKEIGSLEMKIGYEFSIKGLLLEAMTHVSGKEVGIDCCYERLEFLGDSVLDLLITRHLYQSHTDIDPGELTDLRSASVSNENFAQVAIRRNLHLHLLHGSELLRSQIADYVKVISESEDNTRSFQGIRAPKPLGDLVESIAGAMLIDTKLNIDQVWKVFNPLLSPIVTPDKLELPPWRELNELCDSLRCFVKESCVKKGTMVHATLSVQLHNTLLVREGKGQNAKTAKGDAALHLLKDLEKRGISYSSSMSKRKRDASGLTDENSLKPVAQLEYKRHKVDETNLTANARTGLLPLKDTSMEASNLGASVPVIGSINMKKGGPRSALYELCKRLQWPLPEFDSTEYKDRSLFQGCEGLEGSKGQNCFVSKISLCIPNGTALECEGEARPDKKTSHDSAALQMLYELHRLGKLKITDYPTLSVSSK* 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1127 1630 Pfam Dicer dimerisation domain 562 648 - -
Lan3g1127 1630 Pfam PAZ domain 891 1023 IPR003100 GO:0005515
Lan3g1127 1630 CDD RIBOc 1049 1180 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 SUPERFAMILY PAZ domain 887 1004 IPR036085 GO:0005515
Lan3g1127 1630 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 7 1119 - -
Lan3g1127 1630 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 1162 1616 - -
Lan3g1127 1630 ProSitePatterns Ribonuclease III family signature. 1246 1254 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 508 IPR027417 -
Lan3g1127 1630 MobiDBLite consensus disorder prediction 1 23 - -
Lan3g1127 1630 Gene3D Dicer dimerisation domain 557 653 IPR038248 -
Lan3g1127 1630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 31 206 IPR014001 -
Lan3g1127 1630 SUPERFAMILY RNase III domain-like 1026 1187 IPR036389 GO:0004525|GO:0006396
Lan3g1127 1630 SMART ultradead3 20 225 IPR014001 -
Lan3g1127 1630 ProSiteProfiles PAZ domain profile. 892 1004 IPR003100 GO:0005515
Lan3g1127 1630 ProSiteProfiles Ribonuclease III family domain profile. 1029 1118 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 532 IPR001650 -
Lan3g1127 1630 Gene3D - 20 256 IPR027417 -
Lan3g1127 1630 CDD DEXHc_dicer 24 221 - -
Lan3g1127 1630 Pfam Ribonuclease III domain 1246 1354 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 Pfam Ribonuclease III domain 1066 1119 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 PANTHER DICER-RELATED 7 1119 - -
Lan3g1127 1630 PANTHER DICER-RELATED 1162 1616 - -
Lan3g1127 1630 CDD SF2_C_dicer 372 502 - -
Lan3g1127 1630 Gene3D Ribonuclease III domain 1199 1375 IPR036389 GO:0004525|GO:0006396
Lan3g1127 1630 Gene3D Ribonuclease III domain 1026 1159 IPR036389 GO:0004525|GO:0006396
Lan3g1127 1630 Pfam Helicase conserved C-terminal domain 380 491 IPR001650 -
Lan3g1127 1630 SMART helicmild6 399 492 IPR001650 -
Lan3g1127 1630 SMART riboneu5 1048 1189 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 SMART riboneu5 1225 1378 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 SUPERFAMILY RNase III domain-like 1210 1375 IPR036389 GO:0004525|GO:0006396
Lan3g1127 1630 Gene3D paz domain 879 1002 - -
Lan3g1127 1630 Gene3D - 364 529 IPR027417 -
Lan3g1127 1630 CDD RIBOc 1226 1376 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 Gene3D - 1534 1613 - -
Lan3g1127 1630 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 562 652 IPR005034 GO:0016891
Lan3g1127 1630 SMART PAZ_2_a_3 867 1028 IPR003100 GO:0005515
Lan3g1127 1630 ProSiteProfiles Ribonuclease III family domain profile. 1210 1355 IPR000999 GO:0004525|GO:0006396
Lan3g1127 1630 Pfam Type III restriction enzyme, res subunit 35 188 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1127 Lan-Chr3 23600328 23615379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1127 418 490 Eukaryotic Initiation Factors Gene Family AT3G19760 41.892 1.35e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1127 K11592 - gmx:100806831 2104.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1127 3 23600328 23615379 Lan3g1127 3 23600328 23615379 ECH