Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1126 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGGAAAGGGTGCTCAAGTCTCTTTTCATCTTCATTCAGAGGCTTGAAAACAATGGAGCCATTTTCTCCTTCTTCATCCTCTATGGCTTCAGAACAAGTGCACATGAGATCACGTCCTCCTTTTGCTGGTCTTGTTATATGTGTCACTGGTCTCTCTAAAGAAGCAAGGAATCAGGTGATGGAGGCTACACAGAGATTAGGTGGTCGGTATAGCCCCGATTTGAATCCACAATGTACCCATTTGGTGGTTCAGAGCTTTGGTGGACGCAAGTTTGACCATGCGCTACAGCATGGAGCAAAAAATGGTCTCTTCATCGTCACGTTGGTTTGGTTTGTGGATAGTGTCAAGAAAAATGTGAGGTTGAGCGAATCACATTACAGTGTGAAAAGCTATGGGGATAACAGTATGCGCTTAGATGAAAATTCTTCTCTTACTGCAAAAATCCAAGAAACCAGGCATACTAATAATGTTGAAGAATTTCAAAGGTTTTCTGGGAGAGAATCTAACAGAAGTTCGGACTTAACTTTGTCTGGTTGTTCCATCTATGTTGATCCAGTCATTTCATGTGAATTGCGAAACAAGGTTGTTGAGAGTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGCCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTTGGATATTCTAGTAACCTCATTACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATCCGTGCAAAGGCTTGTTCATCTGTCTGCTGATTTGGCAAGGCAAGTTGGCTTGATGCTCGAAGACAATAATGACTTTTCGGGGAAGGAAGTAATAAAGCAAAAAGTCTGTGGCGATCTACATGGCGGCGAAAGTGAAGTTAGTTACGAAGAAAGACAACAGATTGTGAATTCTGCCAAAATTGGTGTCAGAAATCGGCGTGGTCGTCGAATGCAGCAGACTTGTCAGACTCCGATACATCCGATAATGCCCAACAATCTTCTGGACTCCATTTGCTGGTCAATATCTGAGCCAACTTCAAGTGCTTCCATTTACACAGACTCTTCCAGTGTTGAAGATCCAAGTCATAATCCTACTTCAACATTTTTTGATGCAAAAGAGGATGGCAAGGACTCAGAAGCTTCATTTTCAAACTCCACTCGTCCACTGACAGAAAGTGAGAAATCTGAGTTAATATTCAAAAACCATTTTTTAACTGTACTCTTTCCGATCGACCGATTTGCTGAGATGGGTCCTTCATCAAGAACATTTTTCAGCAATAATGGTTTTACATGTCTTCAGGTGTTGGATTATATACATGCATTTTATCAGGAAAACATGTCAAAGGAAGAAACAGAAGCTGCAATTCACACTGATTCAAGACATGCAGATAGGCTTAGATCAGTGTACTCTAGCAAGGAAACAGCAGAGAGTGGCAAAGCCATTTTCAAGAGGATTGAATTATTGGGTAGTCGTATAAGTTTTGAAATGTTGAAACGTGTAAGTGGGGACAACAACTCCAATGTATATGAACTATTACTTAGGGCATAA 1590 0.4132 MGGDGRVEVVSGKGCSSLFSSSFRGLKTMEPFSPSSSSMASEQVHMRSRPPFAGLVICVTGLSKEARNQVMEATQRLGGRYSPDLNPQCTHLVVQSFGGRKFDHALQHGAKNGLFIVTLVWFVDSVKKNVRLSESHYSVKSYGDNSMRLDENSSLTAKIQETRHTNNVEEFQRFSGRESNRSSDLTLSGCSIYVDPVISCELRNKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKSVQRLVHLSADLARQVGLMLEDNNDFSGKEVIKQKVCGDLHGGESEVSYEERQQIVNSAKIGVRNRRGRRMQQTCQTPIHPIMPNNLLDSICWSISEPTSSASIYTDSSSVEDPSHNPTSTFFDAKEDGKDSEASFSNSTRPLTESEKSELIFKNHFLTVLFPIDRFAEMGPSSRTFFSNNGFTCLQVLDYIHAFYQENMSKEETEAAIHTDSRHADRLRSVYSSKETAESGKAIFKRIELLGSRISFEMLKRVSGDNNSNVYELLLRA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1126 529 SMART BRCT_7 184 260 IPR001357 -
Lan3g1126 529 SMART BRCT_7 49 129 IPR001357 -
Lan3g1126 529 SUPERFAMILY BRCT domain 46 140 IPR036420 -
Lan3g1126 529 ProSiteProfiles BRCT domain profile. 182 262 IPR001357 -
Lan3g1126 529 MobiDBLite consensus disorder prediction 364 402 - -
Lan3g1126 529 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 529 - -
Lan3g1126 529 MobiDBLite consensus disorder prediction 364 382 - -
Lan3g1126 529 Pfam twin BRCT domain 55 109 IPR001357 -
Lan3g1126 529 CDD BRCT_TopBP1_rpt2_like 50 129 - -
Lan3g1126 529 Pfam Family of unknown function (DUF6699) 352 513 IPR046522 -
Lan3g1126 529 ProSiteProfiles BRCT domain profile. 47 139 IPR001357 -
Lan3g1126 529 Gene3D BRCT domain 50 141 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1126 Lan-Chr3 23594896 23600050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1126 50 139 Core DNA Replication Machinery Family AT1G77320 38.889 6.99e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1126 - - gmx:100815253 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1126 3 23594896 23600050 Lan3g1126 3 23594896 23600050 ECH
Lan15g1080 15 19795769 19801042 Lan3g1126 3 23594896 23600050 LSH