Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1125 ATGGCAGAAGTTCTGCTAATGAAAGATATTGAAGCCACTGCTTCGCGTCTTGGAATCGATCTTTCCACCATCGATCTCGATTTCATTCACCTTCCCCATGGCGATAACGTTGGCATCGATAGTGATGATGAAGAAATTCTGAATGAGGAGAATCTGGAGTTTGAGTCTGGATTTGGAAACATTATAGTTGTGGATAACCTTCCCGTTGTTCCTAAGGAAAAATTTGAGAAGCTTGAAAGTGTCGTTCGAAAAATTTATAGTCAGATTGGTGTTATTAAGGACGATGGACTATGGATGCCGGTTGATCCTGATAATGAGAAAACTTTGGGTTACTGTTTCATTGAGTATAATACCACTCAGGAAGCTGAGCTTGCTAAAGAGAGGACTCATGGATACAAATTGGATCGCGCACACATATTTTCGGTGAACATGTTTGATGACTTCGACAGGTTCATGAAAGTTCCGGATAAGTGGGCTCCTCCTGAAACCAAGCCATATGCTCCAGGGGAAAATCTTCAACATTGGCTAACTGATGCAAAAGCCCGAGATCAATTTGTGATACGTGCTGGTTCAGATACTGAGGTTCTCTGGAATGATGCAAGGCACTTGAAACCTGATCCTGTGTATAAGCGTACATTTTGGACTGAGAGCTTTGTGCAATGGTCGCCTCTGGGAACTTACTTGGCAACAGTTCATAGGCAGGGGGCAGCTGTTTGGGGAGGTGCTACAACCTTCAACCGTCTTATGCGTTATGCTCATCCACAGGTGAAACTTATTGATTTTTCACCTGGCGAGAAGTATTTGGTAACTTATAGCAGCCACGAACCCAGCAATCCCCGAGATGCTAATAGAGTTGTGATAAATATTTTTGATGTGAGGACCGGTAAATTGATGAGGGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTGCTGGTGGTGTCACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTAATGGAGGAGATGATAAGTATTTTGCAAGAATGGGAAAAAATGTACTCTCTGTATATGAAACTGACACATTTTCTCTCGTTGACAAAAAGTCTTTAAAGGTCGAAAATATAATTGATTTCAGTTGGTCTCCAACTGATCCTATTATTGCACTCTTTGTTCCTGAGATGGGAGGCGGTAACCAGCCTGCTAGGGTAAGCCTGGTTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAAAATCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTCATGTAGACCGGTTTACAAAAACCAAGAAAAGCACATATACAGGCTTTGAGCTCTTCTACATTAAAGAACGTGACATACCTATTGAAGTTTTAGAGCTAGAGAACAAGAATGACAAGATCATCTCATTTGCTTGGGAGCCAAAAGGCCATAGGTTCGCAGTTATCCATGGTGATAATCCCAAGCCTGATGTTAGCTTTTACTCAATGAGGACTGCTCAGCACACTGGCCGGGTTTCAAAGCTCACTACTTCGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCAGTAGGTCGCTTCATTGTACTGGCAGGGTTGAAAGGCTTTAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTACGGAACATTTTATGGCAACTGATATTGAATGGGATCCAACTGGAAGGTATGTTGCTACAGCTGTCACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTCTATCGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACCATCTTTCTTGAGTACCGAGAAAGAGGAAGAGATTTCAAAGAACTTGAAGAAGTACAGTAAGAAATATGAGGCCGAAGATCAAGACGTTTCATTGCTGCTGAGCGAGCAGGAGCGCGAGAAGCGTAGGTTGTTGAAAGAAGAGTGGGAGAGGTGGGTCAATGAATGGAAGAGGTTGCACGAAGAAGAGAAGTTATATAGGCAAAGCCTGAGGGATGGAGAGGCTAGTGATGAAGAAGAGGAATATGAAGCGAAGGACATAGAAGTTGAGGAAGTGATCAATGTATCAGAAGAGGTCATTCACTTTGAATATGGTCAAGAGTGA 2160 0.4269 MAEVLLMKDIEATASRLGIDLSTIDLDFIHLPHGDNVGIDSDDEEILNEENLEFESGFGNIIVVDNLPVVPKEKFEKLESVVRKIYSQIGVIKDDGLWMPVDPDNEKTLGYCFIEYNTTQEAELAKERTHGYKLDRAHIFSVNMFDDFDRFMKVPDKWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKLMRDFKGSADDFAIGGAGGVTGVSWPVFKWSNGGDDKYFARMGKNVLSVYETDTFSLVDKKSLKVENIIDFSWSPTDPIIALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVHVDRFTKTKKSTYTGFELFYIKERDIPIEVLELENKNDKIISFAWEPKGHRFAVIHGDNPKPDVSFYSMRTAQHTGRVSKLTTSKGKQANALFWSPVGRFIVLAGLKGFNGQLEFYNVDELETMATTEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSTEKEEEISKNLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWERWVNEWKRLHEEEKLYRQSLRDGEASDEEEEYEAKDIEVEEVINVSEEVIHFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1125 719 CDD RRM_eIF3B 59 143 IPR034363 -
Lan3g1125 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Lan3g1125 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Lan3g1125 719 SUPERFAMILY DPP6 N-terminal domain-like 217 603 - -
Lan3g1125 719 Gene3D - 59 143 IPR012677 -
Lan3g1125 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan3g1125 719 Gene3D - 179 382 IPR015943 GO:0005515
Lan3g1125 719 Gene3D - 392 632 IPR015943 GO:0005515
Lan3g1125 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan3g1125 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 136 IPR000504 GO:0003723
Lan3g1125 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan3g1125 719 SUPERFAMILY RNA-binding domain, RBD 56 142 IPR035979 GO:0003676
Lan3g1125 719 PANTHER BNACNNG51870D PROTEIN 8 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1125 Lan-Chr3 23589786 23594196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1125 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 76.062 0.0 1166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1125 K03253 - gmx:100779711 1299.26