Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1121 ATGGCTTCCAAGCTCTGCGACTCATGCAATTCCGCCACCGCCACCCTCTTCTGCCGCCCTGACTCCGCCTTCCTCTGCTCCTCTTGCGATTCCAAAATCCACGCCGCCAACAAACTCTCCTCCCGCCATCCACGTGTCACACTCTGCGAGGTTTGCGAACATGCTCCCGCTCACGTGACATGCAAGGCTGATGCTGCTTCTCTATGCTTCGCTTGCGATCGCGATATCCACACTGCTAACTCACTCGCCGCACGCCACGAGCGCGTGCCTGTCACTCCCTTCTTCTGTAACTACGATTCCATTGGTTCCGATGATAACTTCGTCGATCATGATAACCATTTCTTCGCTAACGATGCTGCTGATGATGGCGTCAGCACCGAGGAAGCTGAGGCTGCGTCGTGGTTGCTACCTAATCCGAAAGGAACAGATCTGAACGCGTTTGCTGAAGTGGAACCGGTTCCTTATGTAGATCTGGATTACGATCTGAAAACGGAGCAGCATAAAAGTTCCACTGCTAACGACGGTGTTGTTCCGGTTCAGAACAACGAGCCTTTCAGCTACGGTTACAAGTTCTATTGCTCACATTCACAGTCTCAAATGAGTCATAGTGTGTCATCGTCGTCGATGGAGGTTGGTGTAGTGCCGGACGCGAACCCGGTGTCGGAGATATACAGCAAGGTGGCGGTGGTGGAGGGAGGGAATCACGGTACGGGAGTGGCGGTGGATAGAGAAGCTAGGGTTATGAGGTACAGAGAGAAAAGGAAAAACCGAAAGTTCGAGAAGACTATTCGCTACGCTTCAAGAAAAGCTTATGCTGAAACCAGACCAAGGATCAAAGGGAGGTTTGCTAAACGCTCCGATTCTGATCATCACCCTCTCGCCGGGTACGGCGTCGTTCCGGCTTGTTAA 909 0.5248 MASKLCDSCNSATATLFCRPDSAFLCSSCDSKIHAANKLSSRHPRVTLCEVCEHAPAHVTCKADAASLCFACDRDIHTANSLAARHERVPVTPFFCNYDSIGSDDNFVDHDNHFFANDAADDGVSTEEAEAASWLLPNPKGTDLNAFAEVEPVPYVDLDYDLKTEQHKSSTANDGVVPVQNNEPFSYGYKFYCSHSQSQMSHSVSSSSMEVGVVPDANPVSEIYSKVAVVEGGNHGTGVAVDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDSDHHPLAGYGVVPAC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1121 302 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 301 IPR045281 GO:0009909
Lan3g1121 302 SMART bboxneu5 1 48 IPR000315 GO:0008270
Lan3g1121 302 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lan3g1121 302 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lan3g1121 302 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lan3g1121 302 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 301 - -
Lan3g1121 302 CDD Bbox1_BBX-like 5 48 - -
Lan3g1121 302 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lan3g1121 302 Pfam CCT motif 243 285 IPR010402 GO:0005515
Lan3g1121 302 CDD Bbox1_BBX-like 48 91 - -
Lan3g1121 302 ProSiteProfiles CCT domain profile. 243 285 IPR010402 GO:0005515
Lan3g1121 302 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1121 Lan-Chr3 23542384 23543715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1121 1 300 C2C2-CO-like Transcription Factor Family AT5G24930 49.593 1.73e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan3g1121 zf-B_box 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1121 - - gmx:100794431 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1121 3 23542384 23543715 Lan3g1121 3 23542384 23543715 ECH
Lan15g1069 15 19708221 19709634 Lan3g1121 3 23542384 23543715 LSH