Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1106 ATGGCAAAGTGTCACCGTAACAACGTCGGATCTATCGCTCTCGACCACCGCCGCGCTACCAAAACCTCAACCTCTGGCGGCCACTTCCGCCTCTGGAATTCCACACTCCGCCGCATCATCTTCGACGCCGTCAGCTGCGGCAGCACCTCTCGCTACAAGTATGACAACGACGGCGGCGACGGCGAGATAACCTCCACCGCCTCAACGAGCCGCAGGGAGAAACACGCGGAGGATCAGAAAACGGAGAAGAAGGTTATGAACGTAGCGGGGAATGAAATGGGAGCGTGGAGGAAGAAGAAGGAAGAGGAATTGAAGGAGATGAAGGAAATGGTGAAGGAGTTGGAGGGAGAGGATTTGATGAAGAAGAGAATGGCAGCGAAGAGAGTGAGGATGTTGGCGAAGGAAGAAGGGTTGGAAGTGAGAGGAACACTTGCAATGTTGGGAGTGATTCCTCTACTTGTTGGAATGGTTGATCATGATGAAAATTCCGTTGAATCTCAGATTGAGTCTCTCTATGCATTGCTCAATCTCGGAATCGGAAATGATGCAAATAAAGCAGCCATTGTCAAAGTTGGTGCAGTTCACAAAATGCTGAAGCTTATTGATTGTTCAGATTCATCAGTGTGTGAAGCAATAGTTGCAAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCGATAATTGGATCCTCGGGTGCAATACCGTTCTTAGTTAGAACCCTTCGAAATTTAGATGATAAAAGTAGCCGCCAAGCTAAGCAAGATGCTCTTCGAGCTCTGTACAATCTTTCAATCACTCCAACCAACATTTCATTTGTTTTGGAAACTGATTTGGTCTCATTTCTCATACACTCAATAGGAGACATGGAAATAAGTGAAAGAGTTCTCTCGATCCTAAGCAATTTGGTGTCAACACCGGAGGGTAGAAAAGCTATCAGTACTGAAAGGGACGTAATCCCGATTCTGATGGATGTATTGAATTGGACAGATTCGCCAAAGTGCCAAGAGAAAGCATCATACATTTTGATGATCATGGCACATAAGTCTTGTGGCGACAGGCACGCCATGATTGAGGCAGGGATTGCGTCAACACTTCTTGAGTTGACACTTTTGGGCACCCCATTGGCACAGAAAAGAGCCTCAAGGATATTGGAATGTTTGAGGATAGATAAAGGGAAGCAGGTTTCCGGGAGCTATGGTGGAAACTTGGGTGCAACTGTGTCTGCGCCAATTTGTGGCTCTTCATCATCTTTCACGAAGACGGAGGGAAGAAGCGTGGAAGACGAAGATATGATGAGTGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAAAGTTTGCAGAACAACATGAGGAAAATTGTGAAGAGAGCCAATTTGCGTCAAGATTTCATTCCATCCGAGCGTTTTACTTCACTCACTTCGAGTTTTACTTCAAAGAGCCTACCTCTTTGA 1458 0.4595 MAKCHRNNVGSIALDHRRATKTSTSGGHFRLWNSTLRRIIFDAVSCGSTSRYKYDNDGGDGEITSTASTSRREKHAEDQKTEKKVMNVAGNEMGAWRKKKEEELKEMKEMVKELEGEDLMKKRMAAKRVRMLAKEEGLEVRGTLAMLGVIPLLVGMVDHDENSVESQIESLYALLNLGIGNDANKAAIVKVGAVHKMLKLIDCSDSSVCEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLRNLDDKSSRQAKQDALRALYNLSITPTNISFVLETDLVSFLIHSIGDMEISERVLSILSNLVSTPEGRKAISTERDVIPILMDVLNWTDSPKCQEKASYILMIMAHKSCGDRHAMIEAGIASTLLELTLLGTPLAQKRASRILECLRIDKGKQVSGSYGGNLGATVSAPICGSSSSFTKTEGRSVEDEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLRQDFIPSERFTSLTSSFTSKSLPL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1106 485 Gene3D - 103 389 IPR011989 -
Lan3g1106 485 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 265 IPR000225 GO:0005515
Lan3g1106 485 MobiDBLite consensus disorder prediction 55 80 - -
Lan3g1106 485 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 485 - -
Lan3g1106 485 SMART arm_5 306 348 IPR000225 GO:0005515
Lan3g1106 485 SMART arm_5 267 305 IPR000225 GO:0005515
Lan3g1106 485 SMART arm_5 137 179 IPR000225 GO:0005515
Lan3g1106 485 SMART arm_5 222 266 IPR000225 GO:0005515
Lan3g1106 485 SMART arm_5 181 221 IPR000225 GO:0005515
Lan3g1106 485 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 485 - -
Lan3g1106 485 Coils Coil 97 117 - -
Lan3g1106 485 SUPERFAMILY ARM repeat 106 390 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1106 Lan-Chr3 23421493 23423610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1106 84 389 U-box Gene Family AT2G23140 30.945 3.85e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1106 - - gmx:100796229 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1057 15 19610355 19612784 Lan3g1106 3 23421493 23423610 LSH
Lan10g0936 10 14005717 14008746 Lan3g1106 3 23421493 23423610 PCT
Lan3g1722 3 29749586 29752526 Lan3g1106 3 23421493 23423610 PCT
Lan3g1106 3 23421493 23423610 Lan10g0936 10 14005717 14008746 PCT
Lan3g1106 3 23421493 23423610 Lan3g1722 3 29749586 29752526 PCT