Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1104 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAATTTATAATATAGATGACTCAGATGATGATGATTTTTTGCCTAGAAAACCTGGGACAACTCTGGAAAATTTTGAGAGGATAGTTCGAAGTGATGTGAAAGAGAATTTGTGTCAAGCTTGTGGAGAAAGTGGAAATTTTATTAGCTGTGACACATGCAATTATGTTTACCATCCTAAGTGTTTACTTCCACCACTTAAAGGTCCCGTTCCAATCATTTGGAGGTGCCCTGAATGTGTTAGCCCACTTATTGATATCGATAAGATATTAGATTGCGTGATGTTCCCTACTGTAGCTGCTGATAGTGATGCCACAGTATCTGGGTCAAAGCAATGTCTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATTTGCATTGCAGTTGGGTGCCAGAGAAAGATTTTCAGAATGCTTTCAAGACTCATCCTCGTCTAAGGACTAAACTGAACAACTTCCATCGTCAAATGGCATCGGTCAATACTTCCGAGGAAGATTTTGTTGCCATTCGACCTGAATGGACTACAGTCGACCGAGTACTTGCTTGCAGGGGTGACGATGATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAGTGCTGTTGGGAGTATGAGTCAGACATTTCAGCATTTCAGCCGGAAATAGAAAGATTCAATAGCTTACGTTCTAAGTCCAGCAAACTTTCTTCCCATAAACTAAAAAGCAGTGACAGAGATGATGCTGAATTGAAGAAACAGCAGAAAGAATTCCAACATTATGAAGATAACCCTGATTTTCTGTCGGGTGGTACGCTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGGAAAACCATACAAAGTATCGCTTTCCTAGCAGCCCTTTTTGAAGAGGGCATTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGAGAAACTGGGAACGCGAATTTGCAACATGGGCACCCCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATACGAGATTATGAATTTTACTTTCCAAAACAACAGAAGAAGATCAAGAAAAAGAAATCTGGCCAAATTGTTTCTGAAAGCAAGCAAGAGAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACTTCATTGAAACCTATAATATGGAATTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTATTTTCTTCATTGAAGCAGTACTCTACCAAACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTCATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTGTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCACCTAAAAAAGAACTTATTTTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGCAATTATCAGATATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGCTAGAAGGAGTTGAACCAGATATTGGCGATGCGAATGAATCATTCAATCAGCTGCTAGAAACATCAGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTCATATATTCCCAGTTTCAGCACATGCTTGACTTACTTGAAGATTATTGTTCTTACAAGAATTGGCATTATGAAAGGATAGACGGCAAAGTTGCTGGAGCTGAAAGACAAATACGTATAGATCGTTTTAATGCCAAGAATTCGTCAAGATTTTGCTTTCTTCTGTCTACCAGAGCTGGGGGGTTGGGGATAAACCTCGCAACTGCTGACACAGTCATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACCAACAAGGTGCTGATTTATAGGCTTATAACACGGGGAACTATTGAAGAAAGGATGATGGAGTTGACAAAAAAGAAAATGGTTTTAGAGCATCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAATCAGGAAGAGTTAGATGACATCATAAGGTATGGCTCAAAGGAGTTATTTTCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATCCATTATGATGCTGCTGCTATCGATAGATTGTTGGATCGTGATCAAGTTGGAAATGAAGAGGTTACTTTGGAAGATGAAGATGAAGATGGATTTCTGAAGGCATTTAAGGTTGCAAATTTTGAGTATGTTGATGAAGCTCAGGCTGCAGCCGAGGAGGCAGCACAAAAAAGAGCAATGGAGACTCTAAATAGTTCAGAAAGGACACATTATTGGGAGGAGTTGTTAAAAGACAAGTATCAAGAGCATAGAGTTGAGGAGTTTAATTCCTTGGGCAAAGGGAAGCGAAATCGCAAGACAATTGTTTCTGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTACGAAGCAGACCTTACTGATGGTGATTCAAATTCAACTGGAGCTACTTCTGCTAGAAGGCCTTATAAAAAGAAAGCTCGTGCAGAAAGCACAGAACCGCTCCCTCTGATGGAAGGTGTAGGAAGATCGTTCAGGGTACTTGGCTTTAATCAAAATCAGAGGGCTACGTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGAATTTGATTGGAAGGAGTTTATCCCCCGCATGAAACAGAAGACTTATGAAGAAATTAAAGATTATGGAATCCTTTTCTTCTCTCATATTACTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCCAAAGAAGGTCTCCGAATACAAGATGTGCTTGTTAGGATTGCAATTTTATCCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAAAATCCTCGAAATGCCCTGTTTTCAGATGACGTATTATTACGCTATCCTGGTTTAAAGGGTGCAAAAATATGGAAGGAGGAGCATGATAGACTTTTGTTGCGTGCTGTGATGAAGCATGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAATATTCAGGAGGTCATTTGTAAGGAGTTGAATCTTCCCCTTATAACTTTACCAGTGGCAGGACAAGTTGGCTGTAATACACAAAATGGTCTAAATTTGACAAATGTGGAACTGCCTAGCAACCAATGCCCGGAAAATGGTGGGAATGACATAGCAGCTGATGGTGCACAAGGTTCTGGTGATGCTAAGAACCAAACACAGTTATATCAAGATTCCACAGTACTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTCCTTCTCTTGGAAAAAGGACTCAATGTCGAGTACCAGGAAGAGTACTTTGCTAATCTAAAATCAGATGAAGAACATGAAAGTGAACCTGAGGCTACAGGTTTTCAAAGTTACAAATTAGGGGACCCTGACACCCAAGTGATTGATCAATTGCCTCAAGTGGAAGCAGTAGTTTTGGAAGACATTTCAGCTGCTGCTTGTGATAAGGATCCAAATCAATTGGAATTAGTTCAAGTTTACAATGAGATGTGCCAGGCAGTGAAGGAAAACCCAATAGATTTAGTTCGAAGATCTTCGGAAAGAGAACAAGCAGAGGGTAATATGGTGAAGAACAACCCTCCACTAGAAACCTTTTGTGAAGATATCAACCGACTCCTTACAGTTACACCCACACAACAAGATCAGACTAATGCTGGAATCTCAGTATTCAATTCAGAAAACAAATCAGAGGCTGCTATATCAAAAGAGGACTGCAAACTTGATAACTCTGCAGACAATGAGAGCAAAGATATGGTAATAGAGCCCAAACCTGAAAAAGAAAGCTGCTCCAGTCTGATAGATGAGAAGAAGGGAGATGATACTGAAATAGATGGAACTAAGAATAATGCTGAACTGAATTAG 4224 0.4027 MSSLVERLRVRSDRKPIYNIDDSDDDDFLPRKPGTTLENFERIVRSDVKENLCQACGESGNFISCDTCNYVYHPKCLLPPLKGPVPIIWRCPECVSPLIDIDKILDCVMFPTVAADSDATVSGSKQCLVKQYLVKWKGLSYLHCSWVPEKDFQNAFKTHPRLRTKLNNFHRQMASVNTSEEDFVAIRPEWTTVDRVLACRGDDDEKEYLVKWKELPYDECCWEYESDISAFQPEIERFNSLRSKSSKLSSHKLKSSDRDDAELKKQQKEFQHYEDNPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAALFEEGISPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARAVIRDYEFYFPKQQKKIKKKKSGQIVSESKQERIKFDVLLTSYEMINLDTTSLKPIIWNCMIVDEGHRLKNKDSKLFSSLKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIGDANESFNQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWHYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMELTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFSDENDEAGKSRQIHYDAAAIDRLLDRDQVGNEEVTLEDEDEDGFLKAFKVANFEYVDEAQAAAEEAAQKRAMETLNSSERTHYWEELLKDKYQEHRVEEFNSLGKGKRNRKTIVSVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGATSARRPYKKKARAESTEPLPLMEGVGRSFRVLGFNQNQRATFVQILMRFGVGEFDWKEFIPRMKQKTYEEIKDYGILFFSHITEDITDSSTFTDGVPKEGLRIQDVLVRIAILSLIRDKVKFASENPRNALFSDDVLLRYPGLKGAKIWKEEHDRLLLRAVMKHGYGRWQAIVDDKDLNIQEVICKELNLPLITLPVAGQVGCNTQNGLNLTNVELPSNQCPENGGNDIAADGAQGSGDAKNQTQLYQDSTVLYHFRDMQRRQVEFVKKRVLLLEKGLNVEYQEEYFANLKSDEEHESEPEATGFQSYKLGDPDTQVIDQLPQVEAVVLEDISAAACDKDPNQLELVQVYNEMCQAVKENPIDLVRRSSEREQAEGNMVKNNPPLETFCEDINRLLTVTPTQQDQTNAGISVFNSENKSEAAISKEDCKLDNSADNESKDMVIEPKPEKESCSSLIDEKKGDDTEIDGTKNNAELN* 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1104 1407 MobiDBLite consensus disorder prediction 902 946 - -
Lan3g1104 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 779 IPR027417 -
Lan3g1104 1407 SMART helicmild6 637 721 IPR001650 -
Lan3g1104 1407 MobiDBLite consensus disorder prediction 1222 1241 - -
Lan3g1104 1407 Gene3D - 97 188 - -
Lan3g1104 1407 SMART DUF1086_2 909 1068 IPR009462 GO:0003677|GO:0006338
Lan3g1104 1407 CDD CD1_tandem 101 171 - -
Lan3g1104 1407 Gene3D - 189 240 - -
Lan3g1104 1407 Gene3D - 277 527 IPR038718 -
Lan3g1104 1407 ProSiteProfiles Chromo and chromo shadow domain profile. 191 238 IPR000953 -
Lan3g1104 1407 Pfam SNF2-related domain 305 585 IPR000330 GO:0005524|GO:0140658
Lan3g1104 1407 Pfam Chromo (CHRromatin Organisation MOdifier) domain 126 156 IPR023780 -
Lan3g1104 1407 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 240 IPR023780 -
Lan3g1104 1407 MobiDBLite consensus disorder prediction 1357 1400 - -
Lan3g1104 1407 CDD SF2_C_SNF 606 732 - -
Lan3g1104 1407 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Lan3g1104 1407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 96 IPR013083 -
Lan3g1104 1407 MobiDBLite consensus disorder prediction 902 921 - -
Lan3g1104 1407 Gene3D - 528 752 IPR027417 -
Lan3g1104 1407 ProSiteProfiles Chromo and chromo shadow domain profile. 99 181 IPR000953 -
Lan3g1104 1407 Pfam PHD-finger 53 95 IPR019787 -
Lan3g1104 1407 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Lan3g1104 1407 SUPERFAMILY Chromo domain-like 177 240 IPR016197 -
Lan3g1104 1407 SMART chromo_7 98 167 IPR000953 -
Lan3g1104 1407 SMART chromo_7 189 243 IPR000953 -
Lan3g1104 1407 SUPERFAMILY Chromo domain-like 65 176 IPR016197 -
Lan3g1104 1407 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1053 - -
Lan3g1104 1407 SMART ultradead3 281 494 IPR014001 -
Lan3g1104 1407 Pfam CHD subfamily II, SANT-like domain 932 1065 IPR009462 GO:0003677|GO:0006338
Lan3g1104 1407 CDD SANT 1080 1103 IPR001005 -
Lan3g1104 1407 Pfam CHD subfamily II, DUF1087 843 901 IPR009463 -
Lan3g1104 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 518 IPR027417 -
Lan3g1104 1407 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1053 - -
Lan3g1104 1407 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Lan3g1104 1407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 483 IPR014001 -
Lan3g1104 1407 SMART DUF1087_2 838 904 IPR009463 -
Lan3g1104 1407 SMART PHD_3 52 95 IPR001965 -
Lan3g1104 1407 MobiDBLite consensus disorder prediction 1357 1407 - -
Lan3g1104 1407 Gene3D - 1035 1200 - -
Lan3g1104 1407 CDD CD2_tandem 189 238 - -
Lan3g1104 1407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1104 Lan-Chr3 23384526 23402641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1104 307 782 RAD5 or RAD16-like Gene Family AT1G02670 23.381 9.93e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan3g1104 SNF2_N 1.3e-65 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1056 15 19585017 19606496 Lan3g1104 3 23384526 23402641 LSH
Lan6g1786 6 29176737 29196652 Lan3g1104 3 23384526 23402641 PCT
Lan3g1721 3 29726038 29747358 Lan3g1104 3 23384526 23402641 PCT
Lan3g1104 3 23384526 23402641 Lan6g1786 6 29176737 29196652 PCT
Lan3g1104 3 23384526 23402641 Lan3g1721 3 29726038 29747358 PCT