Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1103 ATGACAGTGGAGAATACTATGGTTGACCCCATTGACGAGTTTCCTATAGGGATGCGTGTTCTTGCAGTAGATGATGACCCAACATGCCTCTTTGTTTTGGAAACTCTACTCAAAAGATGTCAATATCATGTAACCACTACTAATCAAGCGATAACAGCGTTGACTTTGTTGAGAGAAAACAATGAGAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTTGGGCTTGAAATGGACCTACCTGTCATAATGTTGTCGGCAAACGGTGATAAGAAGATGGTGATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTGCTGAAACCTGTGAGAATCGAGGAGCTAAAGAACATATGGCAGCATGTAATGAGGAGGAAGAAGTTTGATTCAAAGGACAAGAACAAAACTAACAACCTAGACAAACCTACTTCCGATTGCGGCAATGGACCAGGGTCAGCAGGAAGAGAAAATTCAGATCAAAATGGAAAGCTGAATAAAAAGAGGAAGGACCAGGATGATGAAGAAGATGATGAGCAAGAGAATGATAATGACAATGAAGACCCTTCGGCACAGAAGAAGCCTCGGGTTGTTTGGTCTGTAGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGAAAAAGCTGTACCTAAAAAAATACTTGATATGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCCAGCCATCTCCAGAAATACAGGCTTTACCTGAAAAGAATCAGTTGTGTGGCAAATCAACAAGCTAATATGGTGGCAGCCTTAGGGAGTGCAGATCATTCCTATTTGAGAATGGGTTCTATGAGTGGCGTTGGACATTTGCAAACATTGAATGGTTCCGGACAGTTTCATAACGCTTTTGGATCCTTTTCACCAAGCAGGGTGATTAGCAGATTGAACACCCCCGGTTTGAATGTGCATGGATTTCATTCTCCTGGAGTACATCACTTGGGTCAAACACAAAATTTAATCGATTCCACCAATGATCAACTTAAGTTCCAGTCAGCCATAGTTCCGGTTAACCAGAATGGTGTTCCGGGAATGCCAGTGTCTGTAGGGCTTGATCAATTGCAGCAGAATACAGATGTGGTTTCTGTTCAAAACCTGACCAATGCTATTGATGCTAGAACAACTTTTCCCATCTCAAATAAACTCCCAGATCCAGGACCAAGAGTAACTGCCTGTGGTTCCCACCCTCGGCGTCTGGGTATCTCAAACAATGCTTTGATGTTGGAAGCTCATCCACAAGAAACACTAGGGGGTATAGTATATGAAAATTCACCTACTTCAGCACACTCACAACATTCAGAAGTTTCTTTATCTTTGCCATATCAAGGTAGATATCCCGATAATTGGTCAGGTGCTATGCAGCTATCTGGGATCCCGACAAAATCTTTTAGTCAGACATCTCTACGTGGTATAGATAACATGGCATCTTTACCCTTACAAGGGGGGAATCTAGAAAGTTCCTTAAATGTCACTTCACTGTATGGTCAATCTCATGATTCCATGACTGATATGCACTCCCAAGGTGTGATTTTTACTAACCGACCTGGGCATATAAGGAATAACATGCCATTCCAAGACATCTCTACTTTCCATTCAAATGTTAGCCGTGGCTCAATGAACCCTTTGAGTGCTCCGCTTAATGGTGTCGTTGGTCCAGCAGGCCATAACAGAAACTTGGACTTCAAGTTTTGTGACCCCATACAAATGAAACGTCATGGGATTGTGGAGTTATCTGCAGAGACCTCGATGAAACATCCGGGTAATATTGTGAACCAGCAGAAGTCTGAACAAAGTCATTTGTCTAACAACCTTGGTTCACTGGAAGACTTTGTCAATTCAGTGATGAAACAGGAGCAAGATAATATGAAATTATTGGATGGAAACTCCATCTGCGATAATTACTCTGGTGGGATACCAATGTGA 1995 0.4236 MTVENTMVDPIDEFPIGMRVLAVDDDPTCLFVLETLLKRCQYHVTTTNQAITALTLLRENNEKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDKKMVMKGISHGACDYLLKPVRIEELKNIWQHVMRRKKFDSKDKNKTNNLDKPTSDCGNGPGSAGRENSDQNGKLNKKRKDQDDEEDDEQENDNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIEKAVPKKILDMMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADHSYLRMGSMSGVGHLQTLNGSGQFHNAFGSFSPSRVISRLNTPGLNVHGFHSPGVHHLGQTQNLIDSTNDQLKFQSAIVPVNQNGVPGMPVSVGLDQLQQNTDVVSVQNLTNAIDARTTFPISNKLPDPGPRVTACGSHPRRLGISNNALMLEAHPQETLGGIVYENSPTSAHSQHSEVSLSLPYQGRYPDNWSGAMQLSGIPTKSFSQTSLRGIDNMASLPLQGGNLESSLNVTSLYGQSHDSMTDMHSQGVIFTNRPGHIRNNMPFQDISTFHSNVSRGSMNPLSAPLNGVVGPAGHNRNLDFKFCDPIQMKRHGIVELSAETSMKHPGNIVNQQKSEQSHLSNNLGSLEDFVNSVMKQEQDNMKLLDGNSICDNYSGGIPM* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1103 664 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Lan3g1103 664 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lan3g1103 664 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Lan3g1103 664 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lan3g1103 664 Gene3D - 17 153 - -
Lan3g1103 664 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lan3g1103 664 MobiDBLite consensus disorder prediction 140 206 - -
Lan3g1103 664 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lan3g1103 664 MobiDBLite consensus disorder prediction 151 170 - -
Lan3g1103 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 639 IPR045279 GO:0009736
Lan3g1103 664 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 639 - -
Lan3g1103 664 SUPERFAMILY CheY-like 17 140 IPR011006 -
Lan3g1103 664 Gene3D - 200 263 - -
Lan3g1103 664 SMART REC_2 18 130 IPR001789 GO:0000160
Lan3g1103 664 PIRSF RR_ARR_type-B 1 661 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan3g1103 664 CDD REC_typeB_ARR-like 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1103 Lan-Chr3 23379367 23383728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1103 1 652 Response Regulator Gene Family AT2G25180 44.760 3.10e-138 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan3g1103 Response_reg 9.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1103 - K14491 gmx:100809002 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0938 10 14029664 14032744 Lan3g1103 3 23379367 23383728 LSH
Lan15g1055 15 19579159 19583482 Lan3g1103 3 23379367 23383728 LSH
Lan10g0938 10 14029664 14032744 Lan3g1103 3 23379367 23383728 PCT
Lan3g1103 3 23379367 23383728 Lan15g1055 15 19579159 19583482 PCT
Lan3g1103 3 23379367 23383728 Lan3g1103 3 23379367 23383728 PCT
Lan15g1055 15 19579159 19583482 Lan3g1103 3 23379367 23383728 PCT
Lan3g1103 3 23379367 23383728 Lan10g0938 10 14029664 14032744 PCT