Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1102 ATGGAAAAACTCATGAGTCAAGAGCCTTATCTTTGTGATAACACTAGAGAGCTTCCTCAAAGTCCAACTACACTATTGCAGAATCCACATGAAAATAATCAGCATCACTCTCTTGAGGAACAAGAACCAAAAGAGAAGGCAAAGACAGTTATTACCTTATTGGATCTGAATGCTCCTTGTGGTGATTCAGCTCTTGATTGCAGTAGTCCAAAGCTGAATCCCTTAACCTGTTTGGAAATGGATTCAGCTAAGACTTCATCAGAAGAAAACCCTCCTGATCCTGAAGGTTTTGATGCAGCAGAAGAGCCTAGAGTATTCTCTTGCAACTACTGCAAGAGAAAGTTCTATAGTTCACAAGCTTTAGGAGGACACCAAAATGCTCATAAGAGAGAAAGGTCAATAGCAAAGAGAGGTCAAAGATTAGGAACACATATAATGGCTTCAGCAGCAGCTTTTGGAATACCATTTCTTCATGATATTGCATCACTACCCTTTAGTAGTAATAAACCACTTGGAATTCAAGCTCACTCTTTGGTTCATAAAGCTTCTAACTTTTCATCTAATATTATTGGGTTTGGAAGCACTTATGGACAACAACTACATGGTTGGTCAAGATCAAAACCCATTATTAATCAACAACCTGGAATAGGGAAGCTAGCAATGGAAAGTTCACACAAGAAAGGGTTAACATTATCATCAAGAGATAACAGTGTTGGTAGATTTGAAGTGGTGAATGTTAGAAGTTCTATGCTGAATTATGAAGCCAATGAAGAAGATATGAAGCTTCTTGATTTATCCTTAAAGCTTTAA 810 0.3765 MEKLMSQEPYLCDNTRELPQSPTTLLQNPHENNQHHSLEEQEPKEKAKTVITLLDLNAPCGDSALDCSSPKLNPLTCLEMDSAKTSSEENPPDPEGFDAAEEPRVFSCNYCKRKFYSSQALGGHQNAHKRERSIAKRGQRLGTHIMASAAAFGIPFLHDIASLPFSSNKPLGIQAHSLVHKASNFSSNIIGFGSTYGQQLHGWSRSKPIINQQPGIGKLAMESSHKKGLTLSSRDNSVGRFEVVNVRSSMLNYEANEEDMKLLDLSLKL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1102 269 Gene3D Classic Zinc Finger 98 151 - -
Lan3g1102 269 MobiDBLite consensus disorder prediction 1 46 - -
Lan3g1102 269 MobiDBLite consensus disorder prediction 13 32 - -
Lan3g1102 269 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 269 - -
Lan3g1102 269 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 269 IPR044246 GO:0009788
Lan3g1102 269 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Lan3g1102 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Lan3g1102 269 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1102 Lan-Chr3 23366425 23367582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1102 39 269 C2H2 Transcription Factor Family AT5G10970 42.629 3.13e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1102 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1102 - - lang:109327413 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1054 15 19568309 19569819 Lan3g1102 3 23366425 23367582 LSH
Lan14g0825 14 15044137 15045231 Lan3g1102 3 23366425 23367582 LSH
Lan3g1720 3 29720609 29721349 Lan3g1102 3 23366425 23367582 PCT
Lan3g1102 3 23366425 23367582 Lan3g1720 3 29720609 29721349 PCT