Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1100 ATGGCCAGACCACAGCAACGATATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTGTCGGAAATTCGACATCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAACAAGACTAATGTGTGGAACAAGGGCAAGAACAAACTTCTCTTACAACCCAAACTCATCACAATCATCATCTTCTAAGCTTCTATCAGCAACTTTGACAGCTAAACTTCACAGATGCTATATGGCTTCACTTCAAATGACTAAGCCATCATTGCCAGAGCCTCAGAGAGTTATAACTTCACCAAATAATGAAAGTGAAAGTGATGCAATGTTATTATTACCAAAGAAGAGAGAACAAGAGGAGCAAGAAACAGAAGGGAAATGGGTTTTCAAGAAGGTTAAAGTTGAAAGTCCTCAGCAGTTTAAGGCTCTTGAAGAAGACCATATTGAGCAAATGATAGAGGAGTTGCTTCATTATGGTTCTATTGAACTCTGTTCTGTTTTTCCACCACAGACTCTTTGA 552 0.4076 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEATRLMCGTRARTNFSYNPNSSQSSSSKLLSATLTAKLHRCYMASLQMTKPSLPEPQRVITSPNNESESDAMLLLPKKREQEEQETEGKWVFKKVKVESPQQFKALEEDHIEQMIEELLHYGSIELCSVFPPQTL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1100 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 177 - -
Lan3g1100 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lan3g1100 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Lan3g1100 183 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Lan3g1100 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1100 Lan-Chr3 23350587 23351610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1100 1 183 AP2-EREBP Transcription Factor Family AT5G25190 68.478 4.07e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan3g1100 AP2 3.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1100 - - gmx:100819158 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1051 15 19541775 19543102 Lan3g1100 3 23350587 23351610 LSH
Lan14g0822 14 15030074 15031400 Lan3g1100 3 23350587 23351610 LSH
Lan3g1100 3 23350587 23351610 Lan15g1051 15 19541775 19543102 PCT
Lan3g1100 3 23350587 23351610 Lan14g0822 14 15030074 15031400 PCT
Lan3g1100 3 23350587 23351610 Lan3g1100 3 23350587 23351610 PCT
Lan15g1051 15 19541775 19543102 Lan3g1100 3 23350587 23351610 PCT
Lan14g0822 14 15030074 15031400 Lan3g1100 3 23350587 23351610 PCT