Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1073 ATGGTACATGCAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTATTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCAAAATGCAAAGACCAATTTCCCTACATCAAAGAATGAAGATGAAGAAGTAACCCCTTATGATGATGACTCTTTCTTATCACCCAAGGCACTATCAGAACTCCTTAGAACAAAGCTCAAGAAATGCTGCAAAGACCCTTCTCCATCCCTCACTTGTTTGAGGCTTGATGCTGATAATTCCCACATTGGAGTGTGGCAAAAAGGAGCAGGACCACGTTCTGATTCTAGTTGGGTCATGAGGGTAGAGCTTGGTAACAAACAACACAAAGAGAGTGCAATATCATCTACTTTGTTAACTGAACCATCACCACACACTAGTGTTGAAAATGATAATAATAATGATAATATTGTTGTTGGAAATGAGGTATCAGAAGAGGATAGAATTGCTATGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCTTGTGGCTCAACTTCAAGTACCCCTCAGCAGAACCTTCCATGTCAAAGTTCTTGA 645 0.4248 MVHAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNEDEEVTPYDDDSFLSPKALSELLRTKLKKCCKDPSPSLTCLRLDADNSHIGVWQKGAGPRSDSSWVMRVELGNKQHKESAISSTLLTEPSPHTSVENDNNNDNIVVGNEVSEEDRIAMQMIEELLNWNYPCGSTSSTPQQNLPCQSS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1073 214 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 201 - -
Lan3g1073 214 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 MobiDBLite consensus disorder prediction 146 171 - -
Lan3g1073 214 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lan3g1073 214 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lan3g1073 214 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lan3g1073 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1073 Lan-Chr3 23046772 23048310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1073 1 202 AP2-EREBP Transcription Factor Family AT5G25390 59.901 3.19e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan3g1073 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1073 - - lang:109326202 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1073 3 23046772 23048310 Lan3g1073 3 23046772 23048310 ECH
Lan1g0226 1 1631295 1632226 Lan3g1073 3 23046772 23048310 ECH
Lan14g0805 14 14904810 14906371 Lan3g1073 3 23046772 23048310 LSH