Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1052 ATGGAGGATATTGAAGAAGGGGTTAATGAAAGTGAAAGTAAGAACTCTATCGAAGGTTTACCTCCGAATCCAACTGCTGCTATTGTTTATCGTCAGATCACACGCACTGATCCTTTGGTTCTTCCATGTAAAAATTCTCTGAAGATAAAGGCGAAGTTGTCTGATGATTATGCTGAGTCGGGATGTATCACTGAAGATTGTCAATCTGATTTCTGTCCACAACTTCATTCAGGGGCATATGCTGATATTGGGTTCAGATCAACTATGGAAGATGTATATATCTGTGCTGACAATTTTGTGCAGAATAGTGGGCTCAAGAACCATATAGATGGACCCAGTGCTTTCTATGCGGTATTTGATGGACATGGTGGAAAGCATGCTGCTGACTTTGCTTGTCATCATTTGCCGAAGTTCATTCTTGAGGATGAAACTTTCCCAAGTGATATTGAAAGGGTAGTTACTTCAACATTTCTGCAAACAGACAATGCCTTCGCGGAAGCTTGCACTCTGGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTGCGGTTGTCATTGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTTTGCCATCGTGGGAAAGCAATCGAAATGTCCAGAGATCATAAACCGGCTTGCAGCAAAGAGAAGAAGCGTATTGAGGCATCTGGCGGGTATGTCTGCGATGGATACCTTAACGGACAACTAAATGTTGCTCGCGCTCTTGGTGACTGGCACATGGAAGGAATGAAAGCCAGAGATGGCGGACCATTAAGTGCAGAACCTGAACTTATGACTACGAAACTCACCGCCGAGGATGAATTTCTCATCATAGGCTGCGACGGGATATGGGATGTATTTCGGAGCCAAAACGCAGTGGACTTTGCTCGACGCAGGCTTCAGGAGCACAACAATCCCACCATGTGTAGCAAGGATCTAGTTGATGAGGCTCTAAAGAGAAAAAGTGGAGACAATTTATCTGCTGTTGTGGTTTGCTTCCAGCAGCAGCCTCCACCTAACTTGGTAGCTCCACACTCTAGAGTGAATAGAAGCTTTTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTCTTGGATGGCTTGGGCAATTGA 1128 0.4557 MEDIEEGVNESESKNSIEGLPPNPTAAIVYRQITRTDPLVLPCKNSLKIKAKLSDDYAESGCITEDCQSDFCPQLHSGAYADIGFRSTMEDVYICADNFVQNSGLKNHIDGPSAFYAVFDGHGGKHAADFACHHLPKFILEDETFPSDIERVVTSTFLQTDNAFAEACTLDAALASGTTALAAVVIGRLLVVANAGDCRAVLCHRGKAIEMSRDHKPACSKEKKRIEASGGYVCDGYLNGQLNVARALGDWHMEGMKARDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNNPTMCSKDLVDEALKRKSGDNLSAVVVCFQQQPPPNLVAPHSRVNRSFSAEGLKELQSFLDGLGN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1052 375 ProSitePatterns PPM-type phosphatase domain signature. 115 123 IPR000222 GO:0043169
Lan3g1052 375 SMART PP2C_4 66 337 IPR001932 -
Lan3g1052 375 MobiDBLite consensus disorder prediction 1 21 - -
Lan3g1052 375 PANTHER PROTEIN PHOSPHATASE 2C 65 360 IPR015655 GO:0004722|GO:0006470
Lan3g1052 375 SUPERFAMILY PP2C-like 71 341 IPR036457 -
Lan3g1052 375 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 65 360 - -
Lan3g1052 375 Gene3D - 57 343 IPR036457 -
Lan3g1052 375 ProSiteProfiles PPM-type phosphatase domain profile. 76 339 IPR001932 -
Lan3g1052 375 CDD PP2Cc 76 339 IPR001932 -
Lan3g1052 375 Pfam Protein phosphatase 2C 84 331 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1052 Lan-Chr3 22828953 22832479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1052 7 375 PP2C-type Phosphatase Gene Family AT2G25620 65.633 0.0 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1052 3 22828953 22832479 Lan3g1052 3 22828953 22832479 ECH
Lan15g1014 15 19296222 19299355 Lan3g1052 3 22828953 22832479 LSH