Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1050 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTGGTGAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTCTCATCAGACCCTGTTGCTATTGATGCCCCCGGTGGTTTTTTGTTCGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGCAAGAGAGCAACAGCAGCAGCAGCAGCAGCAACCACAACCCCAGCAGTCACAACATCAACAGCAGCAGCAACACATGCAGATGCAACAGCTCTTGATGCAGAGGCACGCACAGCAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAACAACAGCAGCAGCAACATCAGCAACAACAACAGCAACAGCAGCAACATCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAAAGCAGAGATAGAGCTCACCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACTCTGGAACTGCAAATGCACTAGCAACAAAGATGTACGAGGAAAGGTTAAAATTGCCCCTTCAGAGGGATTCTTTGGATGACGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTGTTGGATCCAAGTCATGCCTCAATATTGAAGTCAGCTGCAGCTTCTGGCCAGCCTTCAGGGCAATCTATGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTCCAAGCTCGTAATCAGCAATTGCCGGGGTCTACTCAAGATATAAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGCTAGCAATTCCTGGATCAAATCAAGGTAGCAGCAATTTGACTCTGAAAGGGTGGCCACTCACAGGTCTGGAGCAACTACGCTCTGGTCTACTCCAGCAACAAAAACCTTTTATTCAGACTCCTCAGCCTTTTCATCAACTTCAAATGTTGACACCTCAGCAACAGCTTATGTTTGCCCAACAAAATTTAGCATCACCATCTGCCAGTGATGAAAGTAGAAGACTCAGAATGGTCTTGAATAACAGGAGTATGAGCCTAAATAAGGACGGTCTTACAAATTCTGTTGGTGATGTAGTATCAAATATTGGATCACCTCTTCAAGGTGGTGCCCCTCCGTTTGGTCGTGGAGATACAGATATGCTAATGAGGTTGAAATTAGCTCAGTTACAGCAGCAGCATCAGCAACAGCCAAACACTAATCCACAGCAACAACAGCAGCAACAACTTCAACAGCCTGCTCTTTCGAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTCGGGGGAGGTGGTGGCAGTGGCACTGTGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGACCAGGTATCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACGGGAACAGCAAATACAACTGGCCCATCACCAAGTTCCGCACCCTCAACTCCGTCAACTCATACGCCTGGAGATGTGATATCAATGCCAGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGCCCTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATGTCGATCGCTTTGTGGATGATGGATCGCTTGATGAAAATGTTGAGTCCTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTCCTGAATTGAACTCTGTACGTGCAAGCACAAGCAAAGTTGTATGTTGCCACTTTTCATCTGATGGAAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGCACACGGATTCTCTAAAGCAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGGCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTACGGAATTTTACAGGACATTCTGCAGCTGTTATGTCACTAGATTTTCACCCGAATAGAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAAATAAGATATTGGAGTATAAACAATGGCAGTTGTACTAGAGTCTCCAAGGGTGGTACTATCCAGATGAGATTCCAACCTCGTCTAGGGAGGCACCTTGCTGCAGCTGCGGAGAATGTTGTCTCTATATTTGATGTTGAGACACAAGCATGCCTATATTCATTAAAGGGACACACAAAGCCGATACATTCTGTATGTTGGGACCCTTCCGGGGAGTTGCTGGCATCTGTGAGTGAAGACTCGGTCAGAGTTTGGACTCTTGGAACGGGGAGTGAAGGGGAGTGTGTACATGAGCTCAGCTGCAATGGCAGTAAGTTTCACTCATGTGTTTTCCACCCAACATATCCTTCATTGCTGGTCATTGGTTGCTACCAGTCATTGGAGCTATGGGACATGAGTGAGAACAAGACCATGACTATTTCTGCTCATGAAGGTCTTATTGCTGCCTTGTCTGTTTCAACTGTAAATGGTCTAGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2718 0.4536 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQPQQSQHQQQQQHMQMQQLLMQRHAQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQHQQQQQQQQQQQQSRDRAHLLNGSTNGLVGNSGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQSMHGAAGGMSPQVQARNQQLPGSTQDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSSNLTLKGWPLTGLEQLRSGLLQQQKPFIQTPQPFHQLQMLTPQQQLMFAQQNLASPSASDESRRLRMVLNNRSMSLNKDGLTNSVGDVVSNIGSPLQGGAPPFGRGDTDMLMRLKLAQLQQQHQQQPNTNPQQQQQQQLQQPALSNQQSQSSNHNMHQQDKVGGGGGSGTVDGSMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGPGTLTSPSNQLADVDRFVDDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFPELNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRNFTGHSAAVMSLDFHPNRDDLICSCDGDGEIRYWSINNGSCTRVSKGGTIQMRFQPRLGRHLAAAAENVVSIFDVETQACLYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWDMSENKTMTISAHEGLIAALSVSTVNGLVASASHDKFIKLWK* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1050 905 ProSitePatterns Trp-Asp (WD) repeats signature. 682 696 IPR019775 -
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 788 828 IPR001680 GO:0005515
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 662 IPR001680 GO:0005515
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 706 748 IPR001680 GO:0005515
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 698 IPR001680 GO:0005515
Lan3g1050 905 MobiDBLite consensus disorder prediction 476 536 - -
Lan3g1050 905 Pfam WD domain, G-beta repeat 702 739 IPR001680 GO:0005515
Lan3g1050 905 Pfam WD domain, G-beta repeat 622 652 IPR001680 GO:0005515
Lan3g1050 905 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Lan3g1050 905 Pfam WD domain, G-beta repeat 783 818 IPR001680 GO:0005515
Lan3g1050 905 Gene3D - 752 905 IPR015943 GO:0005515
Lan3g1050 905 Gene3D - 599 751 IPR015943 GO:0005515
Lan3g1050 905 SMART WD40_4 866 905 IPR001680 GO:0005515
Lan3g1050 905 SMART WD40_4 656 695 IPR001680 GO:0005515
Lan3g1050 905 SMART WD40_4 781 819 IPR001680 GO:0005515
Lan3g1050 905 SMART WD40_4 699 739 IPR001680 GO:0005515
Lan3g1050 905 SMART WD40_4 825 864 IPR001680 GO:0005515
Lan3g1050 905 SMART WD40_4 614 653 IPR001680 GO:0005515
Lan3g1050 905 MobiDBLite consensus disorder prediction 163 190 - -
Lan3g1050 905 MobiDBLite consensus disorder prediction 89 120 - -
Lan3g1050 905 MobiDBLite consensus disorder prediction 424 556 - -
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 873 905 IPR001680 GO:0005515
Lan3g1050 905 SMART Lish 8 40 IPR006594 GO:0005515
Lan3g1050 905 MobiDBLite consensus disorder prediction 241 274 - -
Lan3g1050 905 CDD WD40 621 905 - -
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 663 698 - -
Lan3g1050 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 124 905 IPR044716 GO:0003714
Lan3g1050 905 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 121 IPR044716 GO:0003714
Lan3g1050 905 SUPERFAMILY WD40 repeat-like 615 905 IPR036322 GO:0005515
Lan3g1050 905 Coils Coil 113 171 - -
Lan3g1050 905 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lan3g1050 905 Pfam LisH 10 36 IPR006594 GO:0005515
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 873 905 - -
Lan3g1050 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 706 744 - -
Lan3g1050 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 124 905 - -
Lan3g1050 905 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 121 - -
Lan3g1050 905 MobiDBLite consensus disorder prediction 424 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1050 Lan-Chr3 22811692 22821101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1050 700 904 Miscellaneous Gene Families AT5G08390 25.714 9.22e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lan3g1050 WD40 0.00087 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1050 - - gmx:100816263 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0974 10 14761911 14772712 Lan3g1050 3 22811692 22821101 LSH
Lan15g1013 15 19284316 19294085 Lan3g1050 3 22811692 22821101 LSH
Lan14g0795 14 14822237 14831153 Lan3g1050 3 22811692 22821101 LSH
Lan10g0974 10 14761911 14772712 Lan3g1050 3 22811692 22821101 PCT
Lan3g1050 3 22811692 22821101 Lan15g1013 15 19284316 19294085 PCT
Lan3g1050 3 22811692 22821101 Lan14g0795 14 14822237 14831153 PCT
Lan3g1050 3 22811692 22821101 Lan3g1050 3 22811692 22821101 PCT
Lan15g1013 15 19284316 19294085 Lan3g1050 3 22811692 22821101 PCT
Lan14g0795 14 14822237 14831153 Lan3g1050 3 22811692 22821101 PCT
Lan3g1050 3 22811692 22821101 Lan10g0974 10 14761911 14772712 PCT