Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1049 ATGGCTCATCACCATAATCAAAATGCCAACAACAACATCAACAAAACTCAACAACAACAACAACAACACATAGTTTTACATGACTTTCTAGGCATGAAGAAATTTTCTGATTCTCCTCAAAACCCTCACCTTGGTCTTTCTGAACCTTCACCCTCTTCAGCATCACGTGGCCCCTTTTCTTCTTCTACCTCTGATATAGCTTCTGAAAAACAGGTAGGGAATCACCTTGAGGGAGTTCCATTCTATGGCCCAAGGAATGATTTTTCTAGCATTGAGATTGGTAACAGACTAGTGGGAAACAAGAGAAGTAATTCTGATTCTACTTTTATTGGTACCTCTAGAGATGCCTCTCAAATGGTCCCTGACTCCTTTCAGAGCTCACATTTGATGAAGATGCTCCGTAGCGTAGGTGGAGGAGGAGATCGGCTTAGAAGGCCAAATGACGATGAAGTGTTACTTGGGATGCAGTCAACAAAGCCAACTGTAGCTTCTCAGATATTCCAGCCTCTCACTGGCACTAAGGTTGATGCTAATAAATGGGAACGATCTATTCTCATGAATGCTGGCCCTTCCGTGCAGCATCCACCGCGTGGTGGGCAACTGACACCTTTTGTCCACCAGTTAGCTTCAAACAAGATTAGGGATTCTCATGCCGGACCTTCATTTATCTCTCACTCAGCTGCTGACGAAGGATCTAGAACCGGAATCAAAGGCCCTGGAATTTTGAATTCTATAAACATGGCTGCTACTGCTACCGAGAAAATTTCATCTTCCGCGCCGCTTGGTGTTAGCAGGCCAAAGCACGTAACTAATGTAATGGACCCAGAGTCTTCTACACCTCCAAGTCAGCAAGGGCTAACATCTGCCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCTCATGTTTTCGATGATGTCCACCCTCATAAGGCAGATGTTATAATGGCTTTAGCTGGGTCAAATGGTGGATCTTGGTCTACAGCATTCTCACCAAAATCTGCTGGAAAGCTGGTTAGTGATAGTAACTTGCACAGTGGAGAAAATGAAACTGGTATAGCGAGTAACGTGCCATTGCCACCGGAACTTCATGCGAGATTGTCTATTACTGGCAGTTCTAGCCATGCCATAGGCCCCGGCGATCGAGTATCAACTCCAGCAGGGGCAAACAAAGGAAGCATTGTAGCAAAAGAGACAAGAAAGCCTATTGAAGCAGCAGAACCCAGTTCTGAAGCCTGA 1239 0.4528 MAHHHNQNANNNINKTQQQQQQHIVLHDFLGMKKFSDSPQNPHLGLSEPSPSSASRGPFSSSTSDIASEKQVGNHLEGVPFYGPRNDFSSIEIGNRLVGNKRSNSDSTFIGTSRDASQMVPDSFQSSHLMKMLRSVGGGGDRLRRPNDDEVLLGMQSTKPTVASQIFQPLTGTKVDANKWERSILMNAGPSVQHPPRGGQLTPFVHQLASNKIRDSHAGPSFISHSAADEGSRTGIKGPGILNSINMAATATEKISSSAPLGVSRPKHVTNVMDPESSTPPSQQGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAGKLVSDSNLHSGENETGIASNVPLPPELHARLSITGSSSHAIGPGDRVSTPAGANKGSIVAKETRKPIEAAEPSSEA* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1049 412 MobiDBLite consensus disorder prediction 1 72 - -
Lan3g1049 412 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 54 411 IPR040390 -
Lan3g1049 412 PANTHER PROTEIN TIFY 8 54 411 - -
Lan3g1049 412 MobiDBLite consensus disorder prediction 1 25 - -
Lan3g1049 412 ProSiteProfiles Tify domain profile. 286 321 IPR010399 -
Lan3g1049 412 MobiDBLite consensus disorder prediction 371 412 - -
Lan3g1049 412 MobiDBLite consensus disorder prediction 397 412 - -
Lan3g1049 412 SMART tify_2 286 321 IPR010399 -
Lan3g1049 412 Pfam tify domain 288 320 IPR010399 -
Lan3g1049 412 MobiDBLite consensus disorder prediction 40 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1049 Lan-Chr3 22807419 22811029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1049 1 381 Tify Gene Family AT4G32570 34.975 5.00e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan3g1049 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1049 - - lang:109327803 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1010 15 19268408 19271594 Lan3g1049 3 22807419 22811029 LSH
Lan3g1049 3 22807419 22811029 Lan15g1010 15 19268408 19271594 PCT
Lan3g1049 3 22807419 22811029 Lan3g1049 3 22807419 22811029 PCT
Lan15g1010 15 19268408 19271594 Lan3g1049 3 22807419 22811029 PCT